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(-)Asym./Biol. Unit
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(-) Description

Authors :  E. Conti, N. P. Franks, P. Brick
Date :  01 Jun 96  (Deposition) - 26 Mar 97  (Release) - 24 Feb 09  (Revision)
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Oxidoreductase, Monooxygenase, Photoprotein, Luminescence (Keyword Search: [Gene Ontology, PubMed, Web (Google))
Reference :  E. Conti, N. P. Franks, P. Brick
Crystal Structure Of Firefly Luciferase Throws Light On A Superfamily Of Adenylate-Forming Enzymes.
Structure V. 4 287 1996
PubMed-ID: 8805533  |  Reference-DOI: 10.1016/S0969-2126(96)00033-0
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - LUCIFERASE
    EC Number1.13.12.7
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    Organism ScientificPHOTINUS PYRALIS
    Organism Taxid7054

 Structural Features

(-) Chains, Units

Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1LCI)

(-) Sites  (0, 0)

(no "Site" information available for 1LCI)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1LCI)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1LCI)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1LCI)

(-) PROSITE Motifs  (1, 1)

Asymmetric/Biological Unit (1, 1)
1AMP_BINDINGPS00455 Putative AMP-binding domain signature.LUCI_PHOPY195-206  1A:195-206

(-) Exons   (0, 0)

(no "Exon" information available for 1LCI)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:523
 aligned with LUCI_PHOPY | P08659 from UniProtKB/Swiss-Prot  Length:550

    Alignment length:541
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543 
               SCOP domains d1lcia_ A: Luciferase                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains ----------------------------------------------------1lciA01 A:56-213  [code=, no name defined]                                                                                                         1lciA02 A:214-355  [code=, no name defined]                                                                                           1lciA03 A:359-435 Luciferase; Domain 3                                            1lciA04 A:441-544  [code=3.30.300.30, no name defined]                                                   CATH domains
               Pfam domains ------------------------------------------------AMP-binding-1lciA01 A:52-469                                                                                                                                                                                                                                                                                                                                                                                                      ------------------------------------------------------     ---------------- Pfam domains
         Sec.struct. author ..................hhhhhhhhhhhhh.....eeeee.....eeehhhhhhhhhhhhhhhhhh......eeeee......hhhhhhhhhhh..eeee......hhhhhhhhhhh...eeee.hhhhhhhhhhhhh.....eeee............hhhhhhhh....................eeeeeee-----..eeeeeehhhhhhhhhhhh............eeee......hhhhhhhhhhhhh..eeee.....hhhhhhhhhh....eee..hhhhhhhhh...hhh.......eee.......hhhhhhhhhhh.......eee.hhh..eeee....---..........eeeeee..............eeeeee..........hhhhhhh...........eeee.....eeee-----.eee..eee.hhhhhhhhh....eeeeeeeeeee...eeeeeeeeee.......hhhhhhhhh....hhh....eeeee....-----...hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AMP_BINDING -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193    |    -|      213       223       233       243       253       263       273       283       293       303       313       323       333       343       353 |   | 363       373       383       393       403       413       423       433 |     443       453       463       473       483       493       503       513       523     | 533       543 
                                                                                                                                                                                                                            198   204                                                                                                                                                    355 359                                                                         435   441                                                                               523   529               

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit

(-) CATH Domains  (3, 4)

Asymmetric/Biological Unit
Class: Alpha Beta (26913)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
Clan: ANL (32)

(-) Gene Ontology  (11, 11)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (LUCI_PHOPY | P08659)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0047077    Photinus-luciferin 4-monooxygenase (ATP-hydrolyzing) activity    Catalysis of the reaction: O2 + ATP + Photinus luciferin = light + diphosphate + AMP + CO2 + oxidized Photinus luciferin.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004497    monooxygenase activity    Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0008218    bioluminescence    The production of light by certain enzyme-catalyzed reactions in cells.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0005777    peroxisome    A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism.


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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

        LUCI_PHOPY | P086591ba3 3iep 3ier 3ies 3rix 4e5d 4g36 4g37 5dv9 5dwv 5kyt 5kyv

(-) Related Entries Specified in the PDB File

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