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(-) Description

Title :  INFLUENZA A VIRUS H5 HEMAGGLUTININ GLOBULAR HEAD
 
Authors :  T. Zuo, J. Sun, G. Wang, P. Zhou, X. Wang, L. Zhang
Date :  20 Sep 15  (Deposition) - 16 Dec 15  (Release) - 16 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Influenza Virus, Globular Head, Hemagglutinin, H5, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Zuo, J. Sun, G. Wang, L. Jiang, Y. Zuo, D. Li, X. Shi, X. Liu, S. Fan, H. Ren, H. Hu, L. Sun, B. Zhou, M. Liang, P. Zhou, X. Wang, L. Zhang
Comprehensive Analysis Of Antibody Recognition In Convalescent Humans From Highly Pathogenic Avian Influenza H5N1 Infection
Nat Commun V. 6 8855 2015
PubMed-ID: 26635249  |  Reference-DOI: 10.1038/NCOMMS9855

(-) Compounds

Molecule 1 - HEMAGGLUTININ
    Chains: A
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: SF9
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Fragment: GLOBULAR HEAD, UNP RESIDUES 61-284
    Gene: HA
    Organism Scientific: INFLUENZA A VIRUS (A/ANHUI/1/2005(H5N1))
    Organism Taxid: 370810
    Strain: A/ANHUI/1/2005(H5N1)

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:154 , HOH A:512 , HOH A:593 , HOH A:598binding site for Mono-Saccharide NAG A 301 bound to ASN A 154
2AC2SOFTWAREASN A:165 , ASN A:236 , ASP A:237 , ALA A:238 , HOH A:613binding site for Mono-Saccharide NAG A 302 bound to ASN A 165

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:55 -A:67
2A:90 -A:135

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5DUT)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5DUT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5DUT)

(-) Exons   (0, 0)

(no "Exon" information available for 5DUT)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:213
                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee....hhhhhhhh......ee..ee............eee.hhhhhhhhhhheeeeeeee..hhhhh.........eeeeee..eee....eee..........eeeeee.....eeeeeeeeee..hhhhhhhhhh.....eeee....eeee...............eeeeeeeee....eeeeee...eeee.eeeeeee...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dut A  47 VKPLILRDCSVAGWLLGNPMCDPEWSYIVEKANPANDLCYPGNFNDYEELKHLLSRINHFEKIQIIPKSSWSDHEASSGVSSACPYQGTPSFFRNVVWLIKKNNTYPTIKRSYNNTNQEDLLILWGIHHSNDAAEQTKLYQNPTTYISVGTSTLNQRLVPKIATRSKVNGQSGRMDFFWTILKPNDAINFESNGNFIAPEYAYKIVKKGDSAI 264
                                    56        66 ||     81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261   
                                                68|                                                                                                                                                                                              
                                                 74
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5DUT)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5DUT)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5DUT)

(-) Gene Ontology  (17, 17)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q1WDM0_9INFA | Q1WDM0: 3mgt 5dum 5dup 5dur

(-) Related Entries Specified in the PDB File

5dum 5dup 5dur