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(-)Asym./Biol. Unit
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Asym./Biol. Unit  (Jmol Viewer)

(-) Description

Title :  INFLUENZA A VIRUS H5 HEMAGGLUTININ GLOBULAR HEAD IN COMPLEX WITH ANTIBODY AVFLUIGG03
 
Authors :  T. Zuo, J. Sun, G. Wang, P. Zhou, X. Wang, L. Zhang
Date :  20 Sep 15  (Deposition) - 16 Dec 15  (Release) - 16 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.05
Chains :  Asym./Biol. Unit :  A,H,L
Keywords :  Influenza Virus, Antibody, Complex, Neutralize, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Zuo, J. Sun, G. Wang, L. Jiang, Y. Zuo, D. Li, X. Shi, X. Liu, S. Fan, H. Ren, H. Hu, L. Sun, B. Zhou, M. Liang, P. Zhou, X. Wang, L. Zhang
Comprehensive Analysis Of Antibody Recognition In Convalescent Humans From Highly Pathogenic Avian Influenza H5N1 Infection
Nat Commun V. 6 8855 2015
PubMed-ID: 26635249  |  Reference-DOI: 10.1038/NCOMMS9855

(-) Compounds

Molecule 1 - HEMAGGLUTININ
    Chains: A
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: SF9
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Fragment: GLOBULAR HEAD, UNP RESIDUES 61-284
    Gene: HA
    Organism Scientific: INFLUENZA A VIRUS (A/ANHUI/1/2005(H5N1))
    Organism Taxid: 370810
    Strain: A/ANHUI/1/2005(H5N1)
 
Molecule 2 - AVFLUIGG03 HEAVY CHAIN
    Chains: H
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK 293T
    Expression System Taxid: 9606
    Expression System Vector Type: PLASMID
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 3 - AVFLUIGG03 LIGHT CHAIN
    Chains: L
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK 293T
    Expression System Taxid: 9606
    Expression System Vector Type: PLASMID
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : AHL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5DUP)

(-) Sites  (0, 0)

(no "Site" information available for 5DUP)

(-) SS Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1A:55 -A:67
2A:90 -A:135
3H:22 -H:97
4H:154 -H:210
5L:22 -L:90
6L:136 -L:196

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Ser H:128 -Ser H:129
2Phe H:160 -Pro H:161
3Glu H:162 -Pro H:163
4Tyr L:142 -Pro L:143

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5DUP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5DUP)

(-) Exons   (0, 0)

(no "Exon" information available for 5DUP)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:195
                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhh.....................hhhhhhhhhh...eeeeee..hhhhh.........eeeeee..eee....eee............eeee.....eeeeeeeeee..hhhhhhhhh......eeee....eeee...............eeeeeeeee....eeeee....eeee.eeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dup A  53 RDCSVAGWLLGNPMCDEKANPANDLCYPGNFNDYEELKHLLSRINHFEKIQIIPKSSWSDHEASSGVSSACPYQGTPSFFRNVVWLIKKNNTYPTIKRSYNNTNQEDLLILWGIHHSNDAAEQTKLYQNPTTYISVGTSTLNQRLVPKIATRSKVNGQSGRMDFFWTILKPNDAINFESNGNFIAPEYAYKIVKK 259
                                    62     || 84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254     
                                          68|                                                                                                                                                                                  
                                           81                                                                                                                                                                                  


Chain H from PDB  Type:PROTEIN  Length:208
                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee....ee...eeeeeeeeee..hhhhheeeeeee.....eeeeeee...ee.......eeeeee....eeeeeeeee.....eeeeeeeee............eeeee...eeeee.......eeeee....eeeeeeee.....eeee.hhh.....ee..........eeeeeee......eeeeeeehhhheeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dup H   1 EVQLLESGGGLVQPGGSLRVSCTNSGFTFSNYAMSWVRQAPGKGLEWVSAISGTYYADSVKGRFTISRDNSKNTMYLQMNSLRAEDTAVYYCVRDDSYDGGGHYGLHNWFDSWGQGTLVTVSSSTKGPSVFPLAPSALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSTYICNVNHKPSNTKVDKKVEP 227
                                    10        20        30        40        50 ||     65        75        85        95       105       115       125       135     ||154       164       174       184       194      |209       219        
                                                                              52|                                                                                141|                                               201|                    
                                                                               58                                                                                 151                                                207                    


Chain L from PDB  Type:PROTEIN  Length:209
                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................eeeee.............eeeee.....eeeee.............eeeeee..eeeeee.........eeeeee......ee............eeeee...hhhhhhh.eeeeeeeeee.....eee.ee..ee....eeeeee........eeeeeeeeehhhhhh...eeeeeee.......eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dup L   2 SVLTQPPSVSGAPGQRVTISCTGSSSNIGAGYDVHWYQQLPGTAPKLLIYGNSNRPSGVPDRFSGSKSGTSASLAITGLQAEDEADYYCQSYDSSVVVFGGGTKLGTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNR 213
                                    11        21        31        41        51        61        71        81        91       101    || 114       124       134       144       154       164       174       184       194       204         
                                                                                                                                  106|                                                                                                       
                                                                                                                                   110
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5DUP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5DUP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5DUP)

(-) Gene Ontology  (17, 17)

Asymmetric/Biological Unit(hide GO term definitions)

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  Sites
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  Cis Peptide Bonds
    Glu H:162 - Pro H:163   [ RasMol ]  
    Phe H:160 - Pro H:161   [ RasMol ]  
    Ser H:128 - Ser H:129   [ RasMol ]  
    Tyr L:142 - Pro L:143   [ RasMol ]  
 

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  5dup
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q1WDM0_9INFA | Q1WDM0: 3mgt 5dum 5dur 5dut

(-) Related Entries Specified in the PDB File

5dum 5dur 5dut