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Title :   STRUCTURE OF THE AQUIFEX AEOLICUS LPXC/LPC-011 COMPLEX

Authors :   C. -J. Lee, J. Najeeb, P. Zhou

Date :   16 Sep 15 (Deposition) - 09 Mar 16 (Release) - 09 Mar 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.01

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Lpxc, Inhibitor, Lipid A, Gram-Negative Bacteria, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. J. Lee, X. Liang, Q. Wu, J. Najeeb, J. Zhao, R. Gopalaswamy, M. Titecat, F. Sebbane, N. Lemaitre, E. J. Toone, P. Zhou
Drug Design From The Cryptic Inhibitor Envelope.
Nat Commun V. 7 10638 2016
PubMed-ID: 26912110 | Reference-DOI: 10.1038/NCOMMS10638

Molecule 1 - UDP-3-O-[3-HYDROXYMYRISTOYL] N-ACETYLGLUCOSAMINE DEACETYLASE
	Chains	:	A, B
	EC Number	:	3.5.1.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET21B
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	LPXC, ENVA, AQ_1772
	Mutation	:	YES
	Organism Scientific	:	AQUIFEX AEOLICUS (STRAIN VF5)
	Organism Taxid	:	224324
	Strain	:	VF5
	Synonym	:	UDP-3-O-ACYL-GLCNAC DEACETYLASE

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 7)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	DMS	2	Ligand/Ion	DIMETHYL SULFOXIDE
3	ZH2	2	Ligand/Ion	4-[4-(4-AMINOPHENYL)BUTA-1,3-DIYN-1-YL]-N-[(2S,3R)-3-HYDROXY-1-(HYDROXYAMINO)-1-OXOBUTAN-2-YL]BENZAMIDE
4	ZN	2	Ligand/Ion	ZINC ION

Biological Unit 1 (2, 2)

No.	Name	Count	Type	Full Name
1	ACT	-1	Ligand/Ion	ACETATE ION
2	DMS	1	Ligand/Ion	DIMETHYL SULFOXIDE
3	ZH2	1	Ligand/Ion	4-[4-(4-AMINOPHENYL)BUTA-1,3-DIYN-1-YL]-N-[(2S,3R)-3-HYDROXY-1-(HYDROXYAMINO)-1-OXOBUTAN-2-YL]BENZAMIDE
4	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (3, 3)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	DMS	1	Ligand/Ion	DIMETHYL SULFOXIDE
3	ZH2	1	Ligand/Ion	4-[4-(4-AMINOPHENYL)BUTA-1,3-DIYN-1-YL]-N-[(2S,3R)-3-HYDROXY-1-(HYDROXYAMINO)-1-OXOBUTAN-2-YL]BENZAMIDE
4	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (7, 7)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HIS A:74 , HIS A:226 , ASP A:230 , ZH2 A:402	binding site for residue ZN A 401
2	AC2	SOFTWARE	HIS A:58 , GLU A:73 , HIS A:74 , THR A:179 , PHE A:180 , ALA A:181 , GLY A:198 , SER A:199 , HIS A:226 , LYS A:227 , ASP A:230 , HIS A:253 , ZN A:401 , HOH A:504	binding site for residue ZH2 A 402
3	AC3	SOFTWARE	HIS B:29 , GLU B:90	binding site for residue DMS A 403
4	AC4	SOFTWARE	HIS B:74 , HIS B:226 , ASP B:230 , ZH2 B:402	binding site for residue ZN B 401
5	AC5	SOFTWARE	HIS B:19 , HIS B:58 , GLU B:73 , HIS B:74 , THR B:179 , ILE B:189 , GLY B:198 , SER B:199 , THR B:203 , HIS B:226 , LYS B:227 , ASP B:230 , HIS B:253 , ZN B:401 , DMS B:404 , HOH B:520 , HOH B:645	binding site for residue ZH2 B 402
6	AC6	SOFTWARE	LYS B:140 , GLU B:142	binding site for residue ACT B 403
7	AC7	SOFTWARE	THR B:56 , HIS B:58 , LYS B:227 , GLY B:252 , HIS B:253 , ZH2 B:402 , HOH B:582 , HOH B:596	binding site for residue DMS B 404

(no "SS Bond" information available for 5DRO)

(no "Cis Peptide Bond" information available for 5DRO)

(no "SAP(SNP)/Variant" information available for 5DRO)

(no "PROSITE Motif" information available for 5DRO)

(no "Exon" information available for 5DRO)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:267
                                                                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...eeeeee......eeeeeeee......eeeee..eeee.hhh.eee.....eeee..eee..hhhhhhhhhhh....eeeeee..........hhhhhhhhhhheeeeeee...ee....eeeee..eeeeee.....eeeeeee......eeeeeee..hhhhh.....eee..hhhhhhhh...........eee..............hhhhhhhhhhhhhhhhhhh..ee.eeeee..hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dro A   2 GLEKTVKEKLSFEGVGIHTGEYSKLIIHPEKEGTGIRFFKNGVYIPARHEFVVHTNHSTDLGFKGQRIKTVEHILSVLHLLEITNVTIEVIGNEIPILDGSGWEFYEAIRKNILNQNREIDYFVVEEPIIVEDEGRLIKAEPSDTLEVTYEGEFKNFLGRQKFTFVEGNEEEIVLARTFAFDWEIEHIKKVGLGKGGSLKNTLVLGKDKVYNPEGLRYENEPVRHKVFDLIGDLYLLGSPVKGKFYSFRGGHSLNVKLVKELAKKQK 268
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261

Chain B from PDB  Type:PROTEIN  Length:267
                                                                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...eeeeee......eeeeeeee......eeeee..eeee.hhh.eee.....eeee..eee..hhhhhhhhhhh....eeeeee..........hhhhhhhhhh.eeeeeee...ee....eeee....eeeee.....eeeeeee......eeeeeee..hhhhh.....eeehhhhhhhhhhh..........eee..............hhhhhhhhhhhhhhhhhhh..ee.eeeee..hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dro B   2 GLEKTVKEKLSFEGVGIHTGEYSKLIIHPEKEGTGIRFFKNGVYIPARHEFVVHTNHSTDLGFKGQRIKTVEHILSVLHLLEITNVTIEVIGNEIPILDGSGWEFYEAIRKNILNQNREIDYFVVEEPIIVEDEGRLIKAEPSDTLEVTYEGEFKNFLGRQKFTFVEGNEEEIVLARTFAFDWEIEHIKKVGLGKGGSLKNTLVLGKDKVYNPEGLRYENEPVRHKVFDLIGDLYLLGSPVKGKFYSFRGGHSLNVKLVKELAKKQK 268
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 5DRO)

(no "CATH Domain" information available for 5DRO)

(no "Pfam Domain" information available for 5DRO)

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Description

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Chains, Units

Ligands, Modified Residues, Ions (4, 7)

Sites (7, 7)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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