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(-) Description

Title :  LPXC FROM A.AAEOLICUS IN COMPLEX WITH 4-[[4-[2-[4-(MORPHOLINOMETHYL) PHENYL]ETHYNYL]PHENOXY]METHYL]TETRAHYDROPYRAN-4-CARBOHYDROXAMIC ACID (COMPOUND 9)
 
Authors :  N. B. Olivier
Date :  19 Jul 14  (Deposition) - 01 Oct 14  (Release) - 10 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.25
Chains :  Asym./Biol. Unit :  A
Keywords :  Antibacterial, Lpxc, Gram Negative Bacteria, Mmp, Hydrophobe, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. E. Murphy-Benenato, N. Olivier, A. Choy, P. L. Ross, M. D. Miller, J. Thresher, N. Gao, M. R. Hale
Synthesis, Structure, And Sar Of Tetrahydropyran-Based Lpxc Inhibitors.
Acs Med. Chem. Lett. V. 5 1213 2014
PubMed-ID: 25408833  |  Reference-DOI: 10.1021/ML500210X

(-) Compounds

Molecule 1 - UDP-3-O-[3-HYDROXYMYRISTOYL] N-ACETYLGLUCOSAMINE DEACETYLASE
    Chains: A
    EC Number: 3.5.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: LPXC, ENVA, AQ_1772
    Organism Scientific: AQUIFEX AEOLICUS
    Organism Taxid: 224324
    Strain: VF5
    Synonym: UDP-3-O-ACYL-GLCNAC DEACETYLASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 5)

Asymmetric/Biological Unit (4, 5)
No.NameCountTypeFull Name
13BX1Ligand/IonN-HYDROXY-4-[(4-{[4-(MORPHOLIN-4-YLMETHYL)PHENYL]ETHYNYL}PHENOXY)METHYL]TETRAHYDRO-2H-PYRAN-4-CARBOXAMIDE
2CL1Ligand/IonCHLORIDE ION
3IMD1Ligand/IonIMIDAZOLE
4ZN2Ligand/IonZINC ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:57 , HIS A:58 , PHE A:158 , HIS A:188 , ZN A:303 , CL A:304binding site for residue IMD A 301
2AC2SOFTWAREHIS A:74 , HIS A:226 , ASP A:230 , 3BX A:305binding site for residue ZN A 302
3AC3SOFTWAREHIS A:58 , HIS A:188 , IMD A:301 , CL A:304binding site for residue ZN A 303
4AC4SOFTWAREASN A:57 , HIS A:58 , PHE A:158 , HIS A:188 , IMD A:301 , ZN A:303 , HOH A:469binding site for residue CL A 304
5AC5SOFTWAREILE A:18 , HIS A:58 , GLU A:73 , HIS A:74 , THR A:179 , PHE A:180 , ILE A:189 , GLY A:198 , SER A:199 , THR A:203 , VAL A:205 , TYR A:212 , HIS A:226 , LYS A:227 , ASP A:230 , HIS A:253 , ZN A:302 , HOH A:475 , HOH A:527 , HOH A:735binding site for residue 3BX A 305

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4U3D)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4U3D)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4U3D)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4U3D)

(-) Exons   (0, 0)

(no "Exon" information available for 4U3D)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:267
                                                                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...eeeeee......eeeeeeee......eeeee..eeee.hhh.eee.....eeee..eee..hhhhhhhhhhhh...eeeeee..........hhhhhhhhhh.eeeeeee...ee....eeeee..eeeeee.....eeeeeee......eeeeeee..hhhhh.....eee..hhhhhhhh...........eee..............hhhhhhhhhhhhhhhhhhh..ee.eeeee..hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4u3d A   2 GLEKTVKEKLSFEGVGIHTGEYSKLIIHPEKEGTGIRFFKNGVYIPARHEFVVHTNHSTDLGFKGQRIKTVEHILSVLHLLEITNVTIEVIGNEIPILDGSGWEFYEAIRKNILNQNREIDYFVVEEPIIVEDEGRLIKAEPSDTLEVTYEGEFKNFLGRQKFTFVEGNEEEIVLARTFAFDWEIEHIKKVGLGKGGSLKNTLVLGKDKVYNPEGLRYENEPVRHKVFDLIGDLYLLGSPVKGKFYSFRGGHSLNVKLVKELAKKQK 268
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4U3D)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4U3D)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4U3D)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        LPXC_AQUAE | O67648: 1p42 1xxe 1yh8 1yhc 2go3 2go4 2ier 2ies 2j65 2jt2 2o3z 3p3c 3p76 4oze 4u3b 5dro 5drp

(-) Related Entries Specified in the PDB File

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