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(-) Description

Title :  STRUCTURE OF A C-TERMINALLY TRUNCATED GLYCOSIDE HYDROLASE DOMAIN FROM SALMONELLA TYPHIMURIUM FLGJ
 
Authors :  P. Zaloba, B. A. Bailey-Elkin, B. L. Mark
Date :  09 Sep 15  (Deposition) - 24 Feb 16  (Release) - 24 Feb 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.15
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Keywords :  Glycoside Hydrolase, Family 73, Flgj, Flagella, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Zaloba, B. A. Bailey-Elkin, M. Derksen, B. L. Mark
Structural And Biochemical Insights Into The Peptidoglycan Hydrolase Domain Of Flgj From Salmonella Typhimurium.
Plos One V. 11 49204 2016
PubMed-ID: 26871950  |  Reference-DOI: 10.1371/JOURNAL.PONE.0149204

(-) Compounds

Molecule 1 - PEPTIDOGLYCAN HYDROLASE FLGJ
    Chains: A, B, C
    EC Number: 3.2.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21 DE3 GOLD HTE
    Expression System Taxid: 469008
    Fragment: UNP RESIDUES 151-301
    Gene: FLGJ, FLA FX, FLAZ, STM1182
    Organism Scientific: SALMONELLA TYPHIMURIUM (STRAIN LT2 / SGSC1412 / ATCC 700720)
    Organism Taxid: 99287
    Strain: LT2 / SGSC1412 / ATCC 700720
    Synonym: MURAMIDASE FLGJ

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): A  
Biological Unit 2 (1x):  B 
Biological Unit 3 (1x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 13)

Asymmetric Unit (3, 13)
No.NameCountTypeFull Name
1CL2Ligand/IonCHLORIDE ION
2IOD10Ligand/IonIODIDE ION
3NA1Ligand/IonSODIUM ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2IOD2Ligand/IonIODIDE ION
3NA-1Ligand/IonSODIUM ION
Biological Unit 2 (1, 3)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2IOD3Ligand/IonIODIDE ION
3NA-1Ligand/IonSODIUM ION
Biological Unit 3 (1, 5)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2IOD5Ligand/IonIODIDE ION
3NA-1Ligand/IonSODIUM ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:200 , TYR A:201binding site for residue IOD A 402
2AC2SOFTWAREVAL A:250 , ALA A:251 , THR A:254binding site for residue NA A 403
3AC3SOFTWARETYR B:224 , GLY B:227binding site for residue IOD B 401
4AC4SOFTWARETYR B:201binding site for residue IOD B 402
5AC5SOFTWARELYS C:233binding site for residue IOD C 401
6AC6SOFTWARETYR A:224 , GLY A:227binding site for residue IOD C 402
7AC7SOFTWARETYR C:224 , GLY C:227binding site for residue IOD C 403
8AC8SOFTWARETYR C:201binding site for residue IOD C 404
9AC9SOFTWAREALA C:268 , HOH C:528binding site for residue CL C 407

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5DN5)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5DN5)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5DN5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5DN5)

(-) Exons   (0, 0)

(no "Exon" information available for 5DN5)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:151
                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh..............................eeeeeeeeee..eeeeeeeeee...hhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dn5 A 151 DSKDFLARLSLPARLASEQSGVPHHLILAQAALESGWGQRQILRENGEPSYNVFGVKATASWKGPVTEITTTEYENGEAKKVKAKFRVYSSYLEALSDYVALLTRNPRYAAVTTAATAEQGAVALQNAGYATDPNYARKLTSMIQQLKAMS 301
                                   160       170       180       190       200       210       220       230       240       250       260       270       280       290       300 


Chain B from PDB  Type:PROTEIN  Length:151
                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.............................eeeeeeeeee..eeeeeeeeee...hhhhhhhhhhhhhhhh..hhhhhh...hhhhhhhhhh.....hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dn5 B 151 DSKDFLARLSLPARLASEQSGVPHHLILAQAALESGWGQRQILRENGEPSYNVFGVKATASWKGPVTEITTTEYENGEAKKVKAKFRVYSSYLEALSDYVALLTRNPRYAAVTTAATAEQGAVALQNAGYATDPNYARKLTSMIQQLKAMS 301
                                   160       170       180       190       200       210       220       230       240       250       260       270       280       290       300 


Chain C from PDB  Type:PROTEIN  Length:141
                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.............................eeeeeeeeee..eeeeeeeeee...hhhhhhhhhhhhhh.hhhhhhhhh...hhhhhhhhhh..hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dn5 C 152 SKDFLARLSLPARLASEQSGVPHHLILAQAALESGWGQRQILRENGEPSYNVFGVKATASWKGPVTEITTTEYENGEAKKVKAKFRVYSSYLEALSDYVALLTRNPRYAAVTTAATAEQGAVALQNARKLTSMIQQLKAMS 301
                                   161       171       181       191       201       211       221       231       241       251       261       271      |290       300 
                                                                                                                                                        278|             
                                                                                                                                                         288
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5DN5)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5DN5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5DN5)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FLGJ_SALTY | P15931: 5dn4

(-) Related Entries Specified in the PDB File

5dn4 5DN4 IS THE FULL-LENGTH GLYCOSIDE HYDROLASE DOMAIN OF FLGJ FROM SALMONELLA TYPHIMURIUM