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(-) Description

Title :  STRUCTURE OF THE GLYCOSIDE HYDROLASE DOMAIN FROM SALMONELLA TYPHIMURIUM FLGJ
 
Authors :  P. Zaloba, B. A. Bailey-Elkin, B. L. Mark
Date :  09 Sep 15  (Deposition) - 24 Feb 16  (Release) - 24 Feb 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Glycoside Hydrolase, Family 73, Flgj, Flagella, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Zaloba, B. A. Bailey-Elkin, M. Derksen, B. L. Mark
Structural And Biochemical Insights Into The Peptidoglycan Hydrolase Domain Of Flgj From Salmonella Typhimurium.
Plos One V. 11 49204 2016
PubMed-ID: 26871950  |  Reference-DOI: 10.1371/JOURNAL.PONE.0149204

(-) Compounds

Molecule 1 - PEPTIDOGLYCAN HYDROLASE FLGJ
    Chains: A
    EC Number: 3.2.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21 DE3 GOLD HTE
    Expression System Taxid: 469008
    Fragment: UNP RESIDUES 151-316
    Gene: FLGJ, FLA FX, FLAZ, STM1182
    Organism Scientific: SALMONELLA TYPHIMURIUM (STRAIN LT2 / SGSC1412 / ATCC 700720)
    Organism Taxid: 99287
    Strain: LT2 / SGSC1412 / ATCC 700720
    Synonym: MURAMIDASE FLGJ

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 12)

Asymmetric/Biological Unit (2, 12)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2IOD11Ligand/IonIODIDE ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:13 , TRP A:36binding site for residue IOD A 401
2AC2SOFTWARESER A:9 , HOH A:589binding site for residue IOD A 402
3AC3SOFTWAREGLN A:40 , ILE A:41binding site for residue IOD A 404
4AC4SOFTWAREIOD A:409binding site for residue IOD A 406
5AC5SOFTWARELYS A:2binding site for residue IOD A 407
6AC6SOFTWAREARG A:43 , THR A:58 , SER A:60 , IOD A:406binding site for residue IOD A 409
7AC7SOFTWAREASP A:132 , LYS A:138binding site for residue IOD A 411
8AC8SOFTWAREARG A:39 , SER A:158binding site for residue CL A 412
9AC9SOFTWAREMET A:-1 , ARG A:39 , GLN A:40 , TYR A:91binding site for residues IOD A 403 and IOD A 408

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5DN4)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5DN4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5DN4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5DN4)

(-) Exons   (0, 0)

(no "Exon" information available for 5DN4)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:159
                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.............................eeeeee...eeeeee...hhhhhhhhhhhhhhhh..hhhhhh..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dn4 A  -1 MDSKDFLARLSLPARLASEQSGVPHHLILAQAALESGWGQRQILRENGEPSYNVFGVKATASWKGPVTEITTTKKVKAKFRVYSSYLEALSDYVALLTRNPRYAAVTTAATAEQGAVALQNAGYATDPNYARKLTSMIQQLKAMSEKVSKTYSANLDNL 164
                                     8        18        28        38        48        58        68  ||    85        95       105       115       125       135       145       155         
                                                                                                   71|                                                                                     
                                                                                                    79
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5DN4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5DN4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5DN4)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FLGJ_SALTY | P15931: 5dn5

(-) Related Entries Specified in the PDB File

5dn5