5DM0 - JenaLib

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Title :   CRYSTAL STRUCTURE OF THE PLANTAZOLICIN METHYLTRANSFERASE BAML IN COMPLEX WITH TRIAZOLIC DESMETHYLPZN ANALOG AND SAH

Authors :   Y. Hao, S. K. Nair

Date :   07 Sep 15 (Deposition) - 23 Sep 15 (Release) - 23 Sep 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.75

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   N-Methyltransferase, Plantazolicin, Desmethylpzn Analog, Transferase- Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. Hao, P. M. Blair, A. Sharma, D. A. Mitchell, S. K. Nair
Insights Into Methyltransferase Specificity And Bioactivity Of Derivatives Of The Antibiotic Plantazolicin.
Acs Chem. Biol. V. 10 1209 2015
PubMed-ID: 25635336 | Reference-DOI: 10.1021/CB501042A

Molecule 1 - PLANTAZOLICIN METHYLTRANSFERASE BAML
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	ROSETTA 2
	Expression System Taxid	:	562
	Gene	:	RBAM_007500
	Organism Scientific	:	BACILLUS AMYLOLIQUEFACIENS SUBSP. PLANTARUM (STRAIN DSM 23117 / BGSC 10A6 / FZB42)
	Organism Taxid	:	326423
	Strain	:	DSM 23117 / BGSC 10A6 / FZB42

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 6)

No.	Name	Count	Type	Full Name
1	5D8	2	Ligand/Ion	ETHYL 2-(2-{2-[(1S)-1-AMINO-4-CARBAMIMIDAMIDOBUTYL]-1,3-THIAZOL-4-YL}-5-METHYL-1,3-OXAZOL-4-YL)-1,3-THIAZOLE-4-CARBOXYLATE
2	SAH	2	Ligand/Ion	S-ADENOSYL-L-HOMOCYSTEINE
3	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 1 (3, 3)

No.	Name	Count	Type	Full Name
1	5D8	1	Ligand/Ion	ETHYL 2-(2-{2-[(1S)-1-AMINO-4-CARBAMIMIDAMIDOBUTYL]-1,3-THIAZOL-4-YL}-5-METHYL-1,3-OXAZOL-4-YL)-1,3-THIAZOLE-4-CARBOXYLATE
2	SAH	1	Ligand/Ion	S-ADENOSYL-L-HOMOCYSTEINE
3	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 2 (3, 3)

No.	Name	Count	Type	Full Name
1	5D8	1	Ligand/Ion	ETHYL 2-(2-{2-[(1S)-1-AMINO-4-CARBAMIMIDAMIDOBUTYL]-1,3-THIAZOL-4-YL}-5-METHYL-1,3-OXAZOL-4-YL)-1,3-THIAZOLE-4-CARBOXYLATE
2	SAH	1	Ligand/Ion	S-ADENOSYL-L-HOMOCYSTEINE
3	SO4	1	Ligand/Ion	SULFATE ION

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HIS A:23 , HOH A:406 , HOH A:465 , HOH A:531 , ARG B:243	binding site for residue SO4 A 301
2	AC2	SOFTWARE	GLN A:18 , PHE A:21 , ASP A:34 , GLY A:68 , GLY A:70 , ASP A:91 , SER A:92 , SER A:93 , ASN A:113 , ALA A:114 , HIS A:131 , CYS A:133 , LEU A:136 , 5D8 A:303 , HOH A:426 , HOH A:450 , HOH A:453 , HOH A:463 , HOH A:470	binding site for residue SAH A 302
3	AC3	SOFTWARE	PHE A:21 , TYR A:33 , ASP A:34 , THR A:38 , LEU A:132 , GLY A:135 , LEU A:136 , ASP A:161 , LEU A:162 , TYR A:182 , GLN A:186 , SER A:190 , MET A:255 , PRO A:256 , SAH A:302 , HOH A:438 , HOH A:470	binding site for residue 5D8 A 303
4	AC4	SOFTWARE	HOH A:546 , LYS B:197 , LYS B:267 , ARG B:268 , TYR B:269 , THR B:270 , HOH B:402 , HOH B:436 , HOH B:455 , HOH B:477	binding site for residue SO4 B 301
5	AC5	SOFTWARE	GLN B:18 , PHE B:21 , GLY B:68 , GLY B:70 , ASP B:91 , SER B:92 , SER B:93 , ASN B:113 , ALA B:114 , GLU B:115 , HIS B:131 , LEU B:136 , PHE B:137 , 5D8 B:303 , HOH B:423 , HOH B:432 , HOH B:442 , HOH B:445 , HOH B:459 , HOH B:467 , HOH B:485	binding site for residue SAH B 302
6	AC6	SOFTWARE	PHE B:21 , TYR B:33 , ASP B:34 , THR B:38 , LEU B:132 , GLY B:135 , LEU B:136 , ASP B:161 , LEU B:162 , TYR B:182 , LEU B:183 , GLN B:186 , SER B:190 , PHE B:218 , MET B:255 , PRO B:256 , SAH B:302 , HOH B:422 , HOH B:467	binding site for residue 5D8 B 303

(no "SS Bond" information available for 5DM0)

(no "Cis Peptide Bond" information available for 5DM0)

(no "SAP(SNP)/Variant" information available for 5DM0)

(no "PROSITE Motif" information available for 5DM0)

(no "Exon" information available for 5DM0)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:266
                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh....eeeee....hhhhhhhhhhh...eeeeee.hhhhhhhhhhh....eeee.hhhhhhhh....eeeeeee.hhhhh.hhhhhhhhhhhheeeeeeeeeeee...hhhhhhh...hhhhhhhhhhhhhhh.hhhhhhhhhhhhhh....eeeeee..........hhhhhhhhhhhhhhhhhhhhhhhh.hhhhh..eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dm0 A   2 EIETIVRESEANRIQAQTWFSHPEKSKVSFRYDERETSSIRSISIETFLSFYSSKFNREPYSVLDIGCGQGQVIQYLNSRFQKIELTGIDSSAQAISSAKKLGINASFICSNAENIMQYVSKKQDIIFIHLCFGLFKNPIAIVNTLIHLLSDQSCIYIVDLDRNSLGEGLNTAQSREEEAYLKDQYRASLTMEEFKQLLHVVTKEQHGVSFHVGNSFIGGFDETSSQFFSLMRNRNLQDALRTSVGEQLKQSQMPALLHGWIIKNK 267
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261

Chain B from PDB  Type:PROTEIN  Length:272
                                                                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh....eeeee....hhhhhhhhh.....eeeeee.hhhhhhhhhhh....eeee.hhhhhhhh....eeeeeee.hhhhh.hhhhhhhhhhhheeeeeeeeeeee...hhhhhhhhh.hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..eeeeee..........hhhhhhhhhhhhhhhhhhh......hhhhh..eeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dm0 B  -1 AAAEIETIVRESEANRIQAQTWFSHPEKSKVSFRYDERETSSIRSISIETFLSFYSSKFNREPYSVLDIGCGQGQVIQYLNSRFQKIELTGIDSSAQAISSAKKLGINASFICSNAENIMQYVSKKQDIIFIHLCFGLFKNPIAIVNTLIHLLSDQSCIYIVDLDRNSLGEGLNTAQSREEEAYLKDQYRASLTMEEFKQLLHVVTKEQHGVSFHVGNSFIGGFDETSSQFFSLMRNRNLQDALRTSVGEQLKQSQMPALLHGWIIKNKRYT 270
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 5DM0)

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Ligands, Modified Residues, Ions (3, 6)

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