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(-) Description

Title :  CRYSTAL STRUCTURE OF THE PLANTAZOLICIN METHYLTRANSFERASE BAML IN COMPLEX WITH MONOAZOLIC DESMETHYLPZN ANALOG AND SAH
 
Authors :  Y. Hao, S. K. Nair
Date :  07 Sep 15  (Deposition) - 30 Sep 15  (Release) - 30 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Plantazolicin, N-Methyltransferase, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Hao, P. M. Blair, A. Sharma, D. A. Mitchell, S. K. Nair
Insights Into Methyltransferase Specificity And Bioactivity Of Derivatives Of The Antibiotic Plantazolicin
Acs Chem. Biol. V. 10 1209 2015
PubMed: search  |  Reference-DOI: 10.1021/CB501042A

(-) Compounds

Molecule 1 - PLANTAZOLICIN METHYLTRANSFERASE BAML
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: RBAM_007500
    Organism Scientific: BACILLUS AMYLOLIQUEFACIENS SUBSP. PLANTARUM (STRAIN DSM 23117 / BGSC 10A6 / FZB42)
    Organism Taxid: 326423
    Strain: DSM 23117 / BGSC 10A6 / FZB42

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
15D71Ligand/IonPROP-2-EN-1-YL 2-[(1S)-1-AMINO-4-CARBAMIMIDAMIDOBUTYL]-1,3-THIAZOLE-4-CARBOXYLATE
2SAH1Ligand/IonS-ADENOSYL-L-HOMOCYSTEINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:21 , TYR A:33 , ASP A:34 , THR A:38 , LEU A:132 , GLY A:135 , LEU A:136 , ASP A:161 , LEU A:162 , TYR A:182 , GLN A:186 , SER A:190 , MET A:255 , PRO A:256 , HOH A:431 , HOH A:449 , HOH A:479binding site for residue 5D7 A 300
2AC2SOFTWAREGLN A:18 , PHE A:21 , GLY A:68 , ASP A:91 , SER A:92 , SER A:93 , ASN A:113 , ALA A:114 , HIS A:131 , LEU A:136 , PHE A:137 , HOH A:402 , HOH A:407 , HOH A:426 , HOH A:433 , HOH A:457 , HOH A:537binding site for residue SAH A 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5DLY)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5DLY)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5DLY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5DLY)

(-) Exons   (0, 0)

(no "Exon" information available for 5DLY)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:266
                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee....hhhhhhhhhhh...eeeeee.hhhhhhhhhhh....eeee.hhhhhhhh....eeeeeee.hhhhh.hhhhhhhhhhhheeeeeeeeeee.hhhhhhhhhhhh.hhhhhhhhhhhhhh..hhhhhhhhhhhhhh....eeeeee..........hhhhhhhhhhhhhhhhhh.hhhhhhhhhhh...eeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dly A   2 EIETIVRESEANRIQAQTWFSHPEKSKVSFRYDERETSSIRSISIETFLSFYSSKFNREPYSVLDIGCGQGQVIQYLNSRFQKIELTGIDSSAQAISSAKKLGINASFICSNAENIMQYVSKKQDIIFIHLCFGLFKNPIAIVNTLIHLLSDQSCIYIVDLDRNSLGEGLNTAQSREEEAYLKDQYRASLTMEEFKQLLHVVTKEQHGVSFHVGNSFIGGFDETSSQFFSLMRNRNLQDALRTSVGEQLKQSQMPALLHGWIIKNK 267
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5DLY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5DLY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5DLY)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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        A7Z2A9_BACVZ | A7Z2A9: 5dm0

(-) Related Entries Specified in the PDB File

5dly 5dm1 5dm2 5dm4