5DLB - JenaLib

Title :   CRYSTAL STRUCTURE OF CHAPERONE ESPG3 OF ESX-3 TYPE VII SECRETION SYSTEM FROM MYCOBACTERIUM MARINUM M

Authors :   S. Chan, M. A. Arbing, J. Kim, S. Kahng, M. R. Sawaya, D. S. Eisenberg, Tb Structural Genomics Consortium (Tbsgc)

Date :   04 Sep 15 (Deposition) - 23 Sep 15 (Release) - 30 Sep 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.77

Chains :   Asym./Biol. Unit : A

Keywords :   Chaperone, Virulence, Esx, Secretion, Structural Genomics, Psi-2, Protein Structure Initiative, Tb Structural Genomics Consortium, Tbsgc (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. Chan, M. A. Arbing, J. Kim, S. Kahng, D. S. Eisenberg
Crystal Structure Of Chaperone Espg3 Of Esx-3 Type Vii Secretion System From Mycobacterium Marinum M
To Be Published
PubMed: search

Compounds

Molecule 1 - CHAPERONE ESPG3
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMAPLE4
	Expression System Strain	:	BL21-GOLD (DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	MMAR_0548
	Organism Scientific	:	MYCOBACTERIUM MARINUM (STRAIN ATCC BAA-535 / M)
	Organism Taxid	:	216594
	Strain	:	ATCC BAA-535 / M

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 44)

Asymmetric/Biological Unit (5, 44)

No.	Name	Count	Type	Full Name
1	CXS	1	Ligand/Ion	3-CYCLOHEXYL-1-PROPYLSULFONIC ACID
2	GOL	3	Ligand/Ion	GLYCEROL
3	PT	7	Ligand/Ion	PLATINUM (II) ION
4	SCN	32	Ligand/Ion	THIOCYANATE ION
5	SO4	1	Ligand/Ion	SULFATE ION

Sites (44, 44)

Asymmetric Unit (44, 44)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP A:177 , PHE A:207 , ARG A:211 , GOL A:302 , GOL A:305 , SCN A:316 , SCN A:318 , SCN A:319 , HOH A:419	binding site for residue CXS A 301
02	AC2	SOFTWARE	ALA A:157 , PHE A:207 , ARG A:211 , CXS A:301 , SCN A:311 , SCN A:312	binding site for residue GOL A 302
03	AC3	SOFTWARE	ARG A:179 , SCN A:330 , SCN A:333	binding site for residue GOL A 303
04	AC4	SOFTWARE	GLU A:9 , ILE A:195 , PRO A:196 , VAL A:197	binding site for residue SO4 A 304
05	AC5	SOFTWARE	ARG A:211 , TYR A:213 , VAL A:236 , CXS A:301 , SCN A:319	binding site for residue GOL A 305
06	AC6	SOFTWARE	SCN A:307 , SCN A:308 , SCN A:309 , SCN A:310 , SCN A:311 , SCN A:312	binding site for residue PT A 306
07	AC7	SOFTWARE	GLY A:90 , PRO A:91 , PRO A:210 , ARG A:211 , PT A:306 , SCN A:308 , SCN A:310 , SCN A:311	binding site for residue SCN A 307
08	AC8	SOFTWARE	ARG A:211 , PT A:306 , SCN A:307 , SCN A:309 , SCN A:311 , SCN A:312	binding site for residue SCN A 308
09	AC9	SOFTWARE	PT A:306 , SCN A:308 , SCN A:310 , SCN A:312	binding site for residue SCN A 309
10	AD1	SOFTWARE	PRO A:160 , THR A:263 , PRO A:264 , PT A:306 , SCN A:307 , SCN A:309 , SCN A:311 , SCN A:312	binding site for residue SCN A 310
11	AD2	SOFTWARE	PRO A:160 , PRO A:264 , GOL A:302 , PT A:306 , SCN A:307 , SCN A:308 , SCN A:310 , SCN A:312	binding site for residue SCN A 311
12	AD3	SOFTWARE	PRO A:159 , PRO A:160 , GOL A:302 , PT A:306 , SCN A:308 , SCN A:309 , SCN A:310 , SCN A:311	binding site for residue SCN A 312
13	AD4	SOFTWARE	SCN A:314 , SCN A:315 , SCN A:316 , SCN A:317 , SCN A:318 , SCN A:319	binding site for residue PT A 313
14	AD5	SOFTWARE	VAL A:245 , SER A:257 , PT A:313 , SCN A:315 , SCN A:317 , SCN A:318 , HOH A:404	binding site for residue SCN A 314
15	AD6	SOFTWARE	MET A:170 , TRP A:255 , PT A:313 , SCN A:314 , SCN A:316 , SCN A:317 , SCN A:319	binding site for residue SCN A 315
16	AD7	SOFTWARE	MET A:170 , GLY A:173 , ASP A:177 , CXS A:301 , PT A:313 , SCN A:315 , SCN A:317 , SCN A:318 , SCN A:319	binding site for residue SCN A 316
17	AD8	SOFTWARE	MET A:168 , MET A:170 , TRP A:255 , VAL A:256 , SER A:257 , PT A:313 , SCN A:314 , SCN A:315 , SCN A:316 , SCN A:318	binding site for residue SCN A 317
18	AD9	SOFTWARE	MET A:168 , CXS A:301 , PT A:313 , SCN A:314 , SCN A:316 , SCN A:317	binding site for residue SCN A 318
19	AE1	SOFTWARE	CXS A:301 , GOL A:305 , PT A:313 , SCN A:315 , SCN A:316	binding site for residue SCN A 319
20	AE2	SOFTWARE	MET A:170 , GLY A:224 , SCN A:321 , SCN A:322	binding site for residue PT A 320
21	AE3	SOFTWARE	MET A:170 , PT A:320 , SCN A:322 , SCN A:336	binding site for residue SCN A 321
22	AE4	SOFTWARE	ARG A:171 , GLY A:224 , PT A:320 , SCN A:321	binding site for residue SCN A 322
23	AE5	SOFTWARE	SCN A:324 , SCN A:325 , SCN A:326 , SCN A:327 , SCN A:328	binding site for residue PT A 323
24	AE6	SOFTWARE	PRO A:36 , PHE A:46 , PT A:323 , SCN A:325 , SCN A:326 , SCN A:327	binding site for residue SCN A 324
25	AE7	SOFTWARE	GLN A:42 , PHE A:46 , PT A:323 , SCN A:324 , SCN A:328	binding site for residue SCN A 325
26	AE8	SOFTWARE	PHE A:46 , ARG A:49 , GLN A:50 , PT A:323 , SCN A:324 , SCN A:327 , SCN A:328	binding site for residue SCN A 326
27	AE9	SOFTWARE	PT A:323 , SCN A:324 , SCN A:326	binding site for residue SCN A 327
28	AF1	SOFTWARE	ALA A:45 , PT A:323 , SCN A:325 , SCN A:326	binding site for residue SCN A 328
29	AF2	SOFTWARE	SCN A:330 , SCN A:331 , SCN A:332 , SCN A:333	binding site for residue PT A 329
30	AF3	SOFTWARE	GLU A:178 , GOL A:303 , PT A:329 , SCN A:333	binding site for residue SCN A 330
31	AF4	SOFTWARE	VAL A:269 , PT A:329	binding site for residue SCN A 331
32	AF5	SOFTWARE	ASP A:143 , ARG A:145 , ARG A:181 , PT A:329	binding site for residue SCN A 332
33	AF6	SOFTWARE	GLU A:178 , ARG A:179 , SER A:182 , PHE A:265 , GOL A:303 , PT A:329 , SCN A:330	binding site for residue SCN A 333
34	AF7	SOFTWARE	SCN A:335 , SCN A:336 , SCN A:337 , SCN A:338	binding site for residue PT A 334
35	AF8	SOFTWARE	PT A:334 , SCN A:336 , SCN A:338	binding site for residue SCN A 335
36	AF9	SOFTWARE	ARG A:171 , SCN A:321 , PT A:334 , SCN A:335 , SCN A:337	binding site for residue SCN A 336
37	AG1	SOFTWARE	ALA A:45 , ARG A:49 , ARG A:171 , PT A:334 , SCN A:336	binding site for residue SCN A 337
38	AG2	SOFTWARE	ALA A:45 , PT A:334 , SCN A:335	binding site for residue SCN A 338
39	AG3	SOFTWARE	SCN A:340 , SCN A:341 , SCN A:342 , SCN A:344	binding site for residue PT A 339
40	AG4	SOFTWARE	PRO A:68 , PT A:339 , SCN A:342 , SCN A:344 , HOH A:401	binding site for residue SCN A 340
41	AG5	SOFTWARE	PT A:339 , SCN A:343	binding site for residue SCN A 341
42	AG6	SOFTWARE	PT A:339 , SCN A:340	binding site for residue SCN A 342
43	AG7	SOFTWARE	SCN A:341	binding site for residue SCN A 343
44	AG8	SOFTWARE	GLU A:72 , PT A:339 , SCN A:340	binding site for residue SCN A 344

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:PROTEIN  Length:263
                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeehhhhhhhhhhhh....hhhhh......hhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhh..eeeeeeee...eeeeeee.......eeeeeee..eeeeeee...hhhhhhhhhhh............eeeehhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhh....eeeeeeeee............eeeeee..eeeeeeeee.....eeeeeee.hhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dlb A   5 PNAVELTVENAWFIAEMVGAGTFPWVLAITTPYSDEAQRSAFFARQRDELTQLGLLSSDGVVNPAVAEWIKVVCFPERWLDLRYVGPLLRGIVAQSAGIMFNTVVALRNAQLVTFTAMDIDDPRALVPVLGVGLSARPPARFEEFSMPMRVGARADERLRSGESLDEVLDYLGIPVSARPVVQAVFSGPRSYVEIVAGCNRDGEHTTTDVGLSIVDTTAGRVLVSPSRAFDGEWVSTFSAGTPFATAVAIDQLIANLPDGQWF 284
                                    14        24        34        44        54        64        74        84      |102       112|      131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281   
                                                                                                                 91|         112|                                                                                                                                                                  
                                                                                                                 100          122

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Classification and Annotation

SCOP Domains (0, 0)

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Gene Ontology (0, 0)

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