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5DLB
Asym. Unit
Info
Asym.Unit (95 KB)
Biol.Unit 1 (87 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CHAPERONE ESPG3 OF ESX-3 TYPE VII SECRETION SYSTEM FROM MYCOBACTERIUM MARINUM M
Authors
:
S. Chan, M. A. Arbing, J. Kim, S. Kahng, M. R. Sawaya, D. S. Eisenberg, Tb Structural Genomics Consortium (Tbsgc)
Date
:
04 Sep 15 (Deposition) - 23 Sep 15 (Release) - 30 Sep 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.77
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Chaperone, Virulence, Esx, Secretion, Structural Genomics, Psi-2, Protein Structure Initiative, Tb Structural Genomics Consortium, Tbsgc
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Chan, M. A. Arbing, J. Kim, S. Kahng, D. S. Eisenberg
Crystal Structure Of Chaperone Espg3 Of Esx-3 Type Vii Secretion System From Mycobacterium Marinum M
To Be Published
[
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Hetero Components
(5, 44)
Info
All Hetero Components
1a: 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID (CXSa)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
3a: PLATINUM (II) ION (PTa)
3b: PLATINUM (II) ION (PTb)
3c: PLATINUM (II) ION (PTc)
3d: PLATINUM (II) ION (PTd)
3e: PLATINUM (II) ION (PTe)
3f: PLATINUM (II) ION (PTf)
3g: PLATINUM (II) ION (PTg)
4a: THIOCYANATE ION (SCNa)
4aa: THIOCYANATE ION (SCNaa)
4ab: THIOCYANATE ION (SCNab)
4ac: THIOCYANATE ION (SCNac)
4ad: THIOCYANATE ION (SCNad)
4ae: THIOCYANATE ION (SCNae)
4af: THIOCYANATE ION (SCNaf)
4b: THIOCYANATE ION (SCNb)
4c: THIOCYANATE ION (SCNc)
4d: THIOCYANATE ION (SCNd)
4e: THIOCYANATE ION (SCNe)
4f: THIOCYANATE ION (SCNf)
4g: THIOCYANATE ION (SCNg)
4h: THIOCYANATE ION (SCNh)
4i: THIOCYANATE ION (SCNi)
4j: THIOCYANATE ION (SCNj)
4k: THIOCYANATE ION (SCNk)
4l: THIOCYANATE ION (SCNl)
4m: THIOCYANATE ION (SCNm)
4n: THIOCYANATE ION (SCNn)
4o: THIOCYANATE ION (SCNo)
4p: THIOCYANATE ION (SCNp)
4q: THIOCYANATE ION (SCNq)
4r: THIOCYANATE ION (SCNr)
4s: THIOCYANATE ION (SCNs)
4t: THIOCYANATE ION (SCNt)
4u: THIOCYANATE ION (SCNu)
4v: THIOCYANATE ION (SCNv)
4w: THIOCYANATE ION (SCNw)
4x: THIOCYANATE ION (SCNx)
4y: THIOCYANATE ION (SCNy)
4z: THIOCYANATE ION (SCNz)
5a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CXS
1
Ligand/Ion
3-CYCLOHEXYL-1-PROPYLSULFONIC ACID
2
GOL
3
Ligand/Ion
GLYCEROL
3
PT
7
Ligand/Ion
PLATINUM (II) ION
4
SCN
32
Ligand/Ion
THIOCYANATE ION
5
SO4
1
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(44, 44)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
34: AF7 (SOFTWARE)
35: AF8 (SOFTWARE)
36: AF9 (SOFTWARE)
37: AG1 (SOFTWARE)
38: AG2 (SOFTWARE)
39: AG3 (SOFTWARE)
40: AG4 (SOFTWARE)
41: AG5 (SOFTWARE)
42: AG6 (SOFTWARE)
43: AG7 (SOFTWARE)
44: AG8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:177 , PHE A:207 , ARG A:211 , GOL A:302 , GOL A:305 , SCN A:316 , SCN A:318 , SCN A:319 , HOH A:419
binding site for residue CXS A 301
02
AC2
SOFTWARE
ALA A:157 , PHE A:207 , ARG A:211 , CXS A:301 , SCN A:311 , SCN A:312
binding site for residue GOL A 302
03
AC3
SOFTWARE
ARG A:179 , SCN A:330 , SCN A:333
binding site for residue GOL A 303
04
AC4
SOFTWARE
GLU A:9 , ILE A:195 , PRO A:196 , VAL A:197
binding site for residue SO4 A 304
05
AC5
SOFTWARE
ARG A:211 , TYR A:213 , VAL A:236 , CXS A:301 , SCN A:319
binding site for residue GOL A 305
06
AC6
SOFTWARE
SCN A:307 , SCN A:308 , SCN A:309 , SCN A:310 , SCN A:311 , SCN A:312
binding site for residue PT A 306
07
AC7
SOFTWARE
GLY A:90 , PRO A:91 , PRO A:210 , ARG A:211 , PT A:306 , SCN A:308 , SCN A:310 , SCN A:311
binding site for residue SCN A 307
08
AC8
SOFTWARE
ARG A:211 , PT A:306 , SCN A:307 , SCN A:309 , SCN A:311 , SCN A:312
binding site for residue SCN A 308
09
AC9
SOFTWARE
PT A:306 , SCN A:308 , SCN A:310 , SCN A:312
binding site for residue SCN A 309
10
AD1
SOFTWARE
PRO A:160 , THR A:263 , PRO A:264 , PT A:306 , SCN A:307 , SCN A:309 , SCN A:311 , SCN A:312
binding site for residue SCN A 310
11
AD2
SOFTWARE
PRO A:160 , PRO A:264 , GOL A:302 , PT A:306 , SCN A:307 , SCN A:308 , SCN A:310 , SCN A:312
binding site for residue SCN A 311
12
AD3
SOFTWARE
PRO A:159 , PRO A:160 , GOL A:302 , PT A:306 , SCN A:308 , SCN A:309 , SCN A:310 , SCN A:311
binding site for residue SCN A 312
13
AD4
SOFTWARE
SCN A:314 , SCN A:315 , SCN A:316 , SCN A:317 , SCN A:318 , SCN A:319
binding site for residue PT A 313
14
AD5
SOFTWARE
VAL A:245 , SER A:257 , PT A:313 , SCN A:315 , SCN A:317 , SCN A:318 , HOH A:404
binding site for residue SCN A 314
15
AD6
SOFTWARE
MET A:170 , TRP A:255 , PT A:313 , SCN A:314 , SCN A:316 , SCN A:317 , SCN A:319
binding site for residue SCN A 315
16
AD7
SOFTWARE
MET A:170 , GLY A:173 , ASP A:177 , CXS A:301 , PT A:313 , SCN A:315 , SCN A:317 , SCN A:318 , SCN A:319
binding site for residue SCN A 316
17
AD8
SOFTWARE
MET A:168 , MET A:170 , TRP A:255 , VAL A:256 , SER A:257 , PT A:313 , SCN A:314 , SCN A:315 , SCN A:316 , SCN A:318
binding site for residue SCN A 317
18
AD9
SOFTWARE
MET A:168 , CXS A:301 , PT A:313 , SCN A:314 , SCN A:316 , SCN A:317
binding site for residue SCN A 318
19
AE1
SOFTWARE
CXS A:301 , GOL A:305 , PT A:313 , SCN A:315 , SCN A:316
binding site for residue SCN A 319
20
AE2
SOFTWARE
MET A:170 , GLY A:224 , SCN A:321 , SCN A:322
binding site for residue PT A 320
21
AE3
SOFTWARE
MET A:170 , PT A:320 , SCN A:322 , SCN A:336
binding site for residue SCN A 321
22
AE4
SOFTWARE
ARG A:171 , GLY A:224 , PT A:320 , SCN A:321
binding site for residue SCN A 322
23
AE5
SOFTWARE
SCN A:324 , SCN A:325 , SCN A:326 , SCN A:327 , SCN A:328
binding site for residue PT A 323
24
AE6
SOFTWARE
PRO A:36 , PHE A:46 , PT A:323 , SCN A:325 , SCN A:326 , SCN A:327
binding site for residue SCN A 324
25
AE7
SOFTWARE
GLN A:42 , PHE A:46 , PT A:323 , SCN A:324 , SCN A:328
binding site for residue SCN A 325
26
AE8
SOFTWARE
PHE A:46 , ARG A:49 , GLN A:50 , PT A:323 , SCN A:324 , SCN A:327 , SCN A:328
binding site for residue SCN A 326
27
AE9
SOFTWARE
PT A:323 , SCN A:324 , SCN A:326
binding site for residue SCN A 327
28
AF1
SOFTWARE
ALA A:45 , PT A:323 , SCN A:325 , SCN A:326
binding site for residue SCN A 328
29
AF2
SOFTWARE
SCN A:330 , SCN A:331 , SCN A:332 , SCN A:333
binding site for residue PT A 329
30
AF3
SOFTWARE
GLU A:178 , GOL A:303 , PT A:329 , SCN A:333
binding site for residue SCN A 330
31
AF4
SOFTWARE
VAL A:269 , PT A:329
binding site for residue SCN A 331
32
AF5
SOFTWARE
ASP A:143 , ARG A:145 , ARG A:181 , PT A:329
binding site for residue SCN A 332
33
AF6
SOFTWARE
GLU A:178 , ARG A:179 , SER A:182 , PHE A:265 , GOL A:303 , PT A:329 , SCN A:330
binding site for residue SCN A 333
34
AF7
SOFTWARE
SCN A:335 , SCN A:336 , SCN A:337 , SCN A:338
binding site for residue PT A 334
35
AF8
SOFTWARE
PT A:334 , SCN A:336 , SCN A:338
binding site for residue SCN A 335
36
AF9
SOFTWARE
ARG A:171 , SCN A:321 , PT A:334 , SCN A:335 , SCN A:337
binding site for residue SCN A 336
37
AG1
SOFTWARE
ALA A:45 , ARG A:49 , ARG A:171 , PT A:334 , SCN A:336
binding site for residue SCN A 337
38
AG2
SOFTWARE
ALA A:45 , PT A:334 , SCN A:335
binding site for residue SCN A 338
39
AG3
SOFTWARE
SCN A:340 , SCN A:341 , SCN A:342 , SCN A:344
binding site for residue PT A 339
40
AG4
SOFTWARE
PRO A:68 , PT A:339 , SCN A:342 , SCN A:344 , HOH A:401
binding site for residue SCN A 340
41
AG5
SOFTWARE
PT A:339 , SCN A:343
binding site for residue SCN A 341
42
AG6
SOFTWARE
PT A:339 , SCN A:340
binding site for residue SCN A 342
43
AG7
SOFTWARE
SCN A:341
binding site for residue SCN A 343
44
AG8
SOFTWARE
GLU A:72 , PT A:339 , SCN A:340
binding site for residue SCN A 344
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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