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(-) Description

Title :  THE STRUCTURE OF THE U32 PEPTIDASE MK0906
 
Authors :  U. Baumann, M. Schacherl, A. A. M. Monatda
Date :  15 Aug 15  (Deposition) - 02 Dec 15  (Release) - 20 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.66
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  U32 Peptidase, Tim Barrel, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Schacherl, A. A. Montada, E. Brunstein, U. Baumann
The First Crystal Structure Of The Peptidase Domain Of The U32 Peptidase Family.
Acta Crystallogr. , Sect. D V. 71 2505 2015
PubMed-ID: 26627657  |  Reference-DOI: 10.1107/S1399004715019549

(-) Compounds

Molecule 1 - PREDICTED PROTEASE OF THE COLLAGENASE FAMILY
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PJEXPRESS411
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: MK0906
    Organism Scientific: METHANOPYRUS KANDLERI
    Organism Taxid: 2320

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric Unit (2, 2)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2ZN1Ligand/IonZINC ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2ZN-1Ligand/IonZINC ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:68 , HIS A:189binding site for residue ZN A 301
2AC2SOFTWARETHR A:35 , LEU A:36 , HIS A:121 , ALA A:172 , ILE A:173 , ARG A:184binding site for residue ACT A 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5D88)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Exons   (0, 0)

(no "Exon" information available for 5D88)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:247
                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............eeeee..hhhhhh.......eeeee.hhhh.........hhhhhhhhhhhhhhh..eeeee.......hhhhhhhhhhhhhhhhhhhhhh....eeee.hhhhhhhhhhhh..eeee.hhhh..hhhhhhhhhhhh..eee.hhhhh.hhhhhhhhhhhh..eeeeee.ee.....hhhhhhhhhhhhhhhh..........hhhhh...ee...hhhhh.eeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5d88 A -20 GSWSHPQFEKSGSMTRRWYLCCSRHHLDTVPEDSDGIVVPVTEHGVATLLPRYPETYEVEDIVDVAKDRGLSVQALMDFTCAGCEHLSPDGYPSLRSTLDYLASDLEVDGVVVADPYLVEVLATEYDLTVVVSHTAAVDTPEKAWHFERLGADVITVDPALNSNEEEVSAIRERVSVELRTAVGAITFRDPVAFFERNLFSHATAEGIEVDPYRNNPYEPMRERVVVWEVREELFDEVFILASGEPP 234
                                   -11||||     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       
                                    -10|||                                                                                                                                                                                                                                         
                                      -2||                                                                                                                                                                                                                                         
                                       -1|                                                                                                                                                                                                                                         
                                         1
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5D88)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5D88)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5D88)

(-) Gene Ontology  (2, 2)

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