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(-) Description

Title :  TRIGONAL CRYSTAL STRUCTURE OF AN ACETYLESTER HYDROLASE FROM CORYNEBACTERIUM GLUTAMICUM
 
Authors :  K. Niefind, C. Toelzer, S. Pal, J. Altenbuchner, H. Watzlawick
Date :  13 Aug 15  (Deposition) - 16 Dec 15  (Release) - 03 Feb 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.20
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Acetylester Hydrolase, Alpha/Beta-Hydrolase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Tolzer, S. Pal, H. Watzlawick, J. Altenbuchner, K. Niefind
A Novel Esterase Subfamily With Alpha / Beta-Hydrolase Fold Suggested By Structures Of Two Bacterial Enzymes Homologous To L-Homoserine O-Acetyl Transferases.
Febs Lett. V. 590 174 2016
PubMed-ID: 26787467  |  Reference-DOI: 10.1002/1873-3468.12031

(-) Compounds

Molecule 1 - HOMOSERINE O-ACETYLTRANSFERASE
    Chains: A, B
    EC Number: 2.3.1.-, 2.3.1.31
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PHWG771
    Expression System Strain: JM109
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: CG0961, CGL0839
    Organism Scientific: CORYNEBACTERIUM GLUTAMICUM
    Organism Taxid: 1718
    Synonym: ACETYL ESTER HYDROLASE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 15)

Asymmetric/Biological Unit (1, 15)
No.NameCountTypeFull Name
1GOL15Ligand/IonGLYCEROL

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETHR A:17 , GOL A:406binding site for residue GOL A 401
02AC2SOFTWARETYR A:15 , THR A:17binding site for residue GOL A 402
03AC3SOFTWARELEU A:44binding site for residue GOL A 403
04AC4SOFTWAREPHE A:244 , PHE A:329 , ASN A:330 , HOH A:502binding site for residue GOL A 404
05AC5SOFTWAREGOL A:401binding site for residue GOL A 406
06AC6SOFTWAREGOL B:407binding site for residue GOL B 401
07AC7SOFTWAREGOL B:403binding site for residue GOL B 402
08AC8SOFTWAREGLN B:63 , GOL B:402binding site for residue GOL B 403
09AC9SOFTWARETRP B:57 , TYR B:58 , SER B:59 , SER B:142 , TRP B:214 , HIS B:325 , LEU B:326 , PHE B:329binding site for residue GOL B 404
10AD1SOFTWAREARG B:231 , GOL B:409binding site for residue GOL B 405
11AD2SOFTWAREGOL B:401binding site for residue GOL B 407
12AD3SOFTWAREPHE B:244 , ASN B:330 , GOL B:405binding site for residue GOL B 409

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5D7B)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5D7B)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5D7B)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5D7B)

(-) Exons   (0, 0)

(no "Exon" information available for 5D7B)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:349
                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhh..eeeeeeeee.....eeeeeeeeeeee.........eee........hhhhhhhh............eeeee...................hhhhh...hhhhhhhhhhhhhhhhhh.....eeeeehhhhhhhhhhhhhhhhhh.eeeee......hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh...eeee.........hhhhhhhhhh.....ee......hhhhhhhh...hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5d7b A   1 MLDNSFYTAEVQGPYETASIGRLELEEGGVIEDCWLAYATAGTLNEDKSNAILIPTWYSGTHQTWFQQYIGTDHALDPSKYFIISINQIGNGLSVSPANTADDSISMSKFPNVRIGDDVVAQDRLLRQEFGITELFAVVGGSMGAQQTYEWIVRFPDQVHRAAPIAGTAKNTPHDFIFTQTLNETVEADPGFNGGEYSSHEEVADGLRRQSHLWAAMGFSTEFWKQEAWRRLGLESKESVLADFLDPLFMSMDPNTLLNNAWKWQHGDVSRHTGGDLAAALGRVKAKTFVMPISEDMFFPVRDCAAEQALIPGSELRVIEDIAGHLGLFNVSENYIPQIDKNLKELFES 349
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340         


Chain B from PDB  Type:PROTEIN  Length:349
                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhh..eeeeeeeee.....eeeeeeeeeeee.........eee........hhhhhhhh............eeeee...................hhhhh...hhhhhhhhhhhhhhhhhh.....eeeeehhhhhhhhhhhhhhhhhh.eeeee......hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh...eeee.........hhhhhhhhhh.....ee......hhhhhhhh...hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5d7b B   1 MLDNSFYTAEVQGPYETASIGRLELEEGGVIEDCWLAYATAGTLNEDKSNAILIPTWYSGTHQTWFQQYIGTDHALDPSKYFIISINQIGNGLSVSPANTADDSISMSKFPNVRIGDDVVAQDRLLRQEFGITELFAVVGGSMGAQQTYEWIVRFPDQVHRAAPIAGTAKNTPHDFIFTQTLNETVEADPGFNGGEYSSHEEVADGLRRQSHLWAAMGFSTEFWKQEAWRRLGLESKESVLADFLDPLFMSMDPNTLLNNAWKWQHGDVSRHTGGDLAAALGRVKAKTFVMPISEDMFFPVRDCAAEQALIPGSELRVIEDIAGHLGLFNVSENYIPQIDKNLKELFES 349
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5D7B)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5D7B)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5D7B)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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        Q8NS43_CORGL | Q8NS43: 5d6o

(-) Related Entries Specified in the PDB File

5d60 5D60 CONTAINS THE SAME PROTEIN IN A DIFFERENT CRYSTAL PACKING