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(-) Description

Title :  ORTHORHOMBIC CRYSTAL STRUCTURE OF AN ACETYLESTER HYDROLASE FROM CORYNEBACTERIUM GLUTAMICUM
 
Authors :  K. Niefind, C. Toelzer, J. Altenbuchner, H. Watzlawick
Date :  12 Aug 15  (Deposition) - 09 Dec 15  (Release) - 03 Feb 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Acetylester Hydrolase, Alpha/Beta Hydrolase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Tolzer, S. Pal, H. Watzlawick, J. Altenbuchner, K. Niefind
A Novel Esterase Subfamily With Alpha / Beta-Hydrolase Fold Suggested By Structures Of Two Bacterial Enzymes Homologous To L-Homoserine O-Acetyl Transferases.
Febs Lett. V. 590 174 2016
PubMed-ID: 26787467  |  Reference-DOI: 10.1002/1873-3468.12031

(-) Compounds

Molecule 1 - HOMOSERINE O-ACETYLTRANSFERASE
    Chains: A, B, C, D
    EC Number: 2.3.1.-, 2.3.1.31
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PHWG771
    Expression System Strain: JM109
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: CG0961, CGL0839
    Organism Scientific: CORYNEBACTERIUM GLUTAMICUM (STRAIN ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)
    Organism Taxid: 196627
    Strain: ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 30)

Asymmetric Unit (3, 30)
No.NameCountTypeFull Name
1CL8Ligand/IonCHLORIDE ION
2GOL17Ligand/IonGLYCEROL
3MG5Ligand/IonMAGNESIUM ION
Biological Unit 1 (1, 11)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL11Ligand/IonGLYCEROL
3MG-1Ligand/IonMAGNESIUM ION
Biological Unit 2 (1, 6)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL6Ligand/IonGLYCEROL
3MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (30, 30)

Asymmetric Unit (30, 30)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETRP A:57 , TYR A:58 , SER A:142 , MET A:143 , GOL A:407binding site for residue CL A 401
02AC2SOFTWARETHR A:61 , THR A:64 , GOL A:410binding site for residue CL A 402
03AC3SOFTWAREHIS A:74 , HOH A:534 , HOH A:540 , HOH A:572 , HOH A:672 , HOH A:892 , HOH A:905binding site for residue MG A 403
04AC4SOFTWARELEU A:2 , ASN A:4 , TYR A:7 , GLY A:92 , SER A:96 , ALA A:98 , ASN A:99 , HOH A:614binding site for residue GOL A 404
05AC5SOFTWAREGLU A:227 , ARG A:230 , GLU A:235 , HOH A:513 , HOH A:730 , HOH A:760 , GLN B:226binding site for residue GOL A 405
06AC6SOFTWAREPRO A:14 , TYR A:15 , GLU A:16 , THR A:40 , HOH A:588 , ARG C:127 , THR C:133 , HOH C:665binding site for residue GOL A 406
07AC7SOFTWARETRP A:57 , TYR A:58 , SER A:59 , SER A:142 , TRP A:214 , HIS A:325 , LEU A:326 , PHE A:329 , CL A:401binding site for residue GOL A 407
08AC8SOFTWAREARG A:127 , HOH A:542binding site for residue GOL A 408
09AC9SOFTWAREGLY A:13 , PRO A:14 , THR A:40 , PHE A:66 , HOH A:573 , HOH A:580 , HOH A:751 , HOH C:665binding site for residue GOL A 409
10AD1SOFTWAREGLN A:63 , THR A:64 , CL A:402 , HOH A:510 , HOH A:530binding site for residue GOL A 410
11AD2SOFTWAREGLY A:233 , GLU A:235 , ALA A:306 , LEU A:310 , HOH A:501 , HOH A:546 , HOH A:615binding site for residue GOL A 411
12AD3SOFTWARETRP B:57 , TYR B:58 , SER B:142 , MET B:143 , HOH B:597binding site for residue CL B 401
13AD4SOFTWARETHR B:61 , THR B:64 , HOH B:700binding site for residue CL B 402
14AD5SOFTWAREHIS B:74 , HOH B:580 , HOH B:599 , HOH B:624 , HOH B:715 , HOH B:894binding site for residue MG B 403
15AD6SOFTWAREPRO B:97 , MET B:107 , SER B:108 , PHE B:110 , ASN B:255 , ASN B:259binding site for residue GOL B 404
16AD7SOFTWARELEU B:2 , ASN B:4 , TYR B:7 , GLY B:92 , ALA B:98 , ASN B:99 , HOH B:535binding site for residue GOL B 405
17AD8SOFTWAREPRO A:173 , GLU A:235 , SER A:239 , ASP A:243 , HOH A:613 , LYS B:225 , GLU B:227 , HOH B:741binding site for residue GOL B 406
18AD9SOFTWARETRP C:57 , TYR C:58 , SER C:142 , MET C:143 , GOL C:404binding site for residue CL C 401
19AE1SOFTWAREGLY C:60 , THR C:61 , THR C:64 , HOH C:676binding site for residue CL C 402
20AE2SOFTWAREASP C:73 , HIS C:74 , HOH C:519 , HOH C:556 , HOH C:580 , HOH C:718 , HOH C:726binding site for residue MG C 403
21AE3SOFTWARETRP C:57 , TYR C:58 , SER C:142 , HIS C:325 , LEU C:326 , PHE C:329 , CL C:401binding site for residue GOL C 404
22AE4SOFTWAREARG C:114 , HIS C:266 , ASP C:268 , ARG C:271 , HOH C:605 , HOH C:624binding site for residue GOL C 405
23AE5SOFTWARETRP D:57 , TYR D:58 , SER D:142 , MET D:143 , GOL D:406binding site for residue CL D 401
24AE6SOFTWAREGLY D:60 , THR D:61 , THR D:64 , HOH D:666binding site for residue CL D 402
25AE7SOFTWAREHIS D:74 , HOH D:549 , HOH D:605 , HOH D:678 , HOH D:684 , HOH D:911binding site for residue MG D 403
26AE8SOFTWAREVAL D:11 , GLN D:63 , HOH D:810 , HOH D:823 , HOH D:973binding site for residue MG D 404
27AE9SOFTWAREPRO C:173 , LEU C:234 , GLU C:235 , SER C:239 , LYS D:225 , GLU D:227 , HOH D:676binding site for residue GOL D 405
28AF1SOFTWARETRP D:57 , TYR D:58 , SER D:59 , SER D:142 , TRP D:214 , HIS D:325 , LEU D:326 , PHE D:329 , CL D:401binding site for residue GOL D 406
29AF2SOFTWAREPRO D:97 , MET D:107 , PHE D:110 , ASN D:255 , ASN D:259 , HOH D:631binding site for residue GOL D 407
30AF3SOFTWARELEU C:2 , ASN C:4 , TYR C:7 , GLY C:92 , ALA C:98 , ASN C:99 , ASP C:253 , HOH D:511binding site for residue GOL D 408

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5D6O)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5D6O)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5D6O)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5D6O)

(-) Exons   (0, 0)

(no "Exon" information available for 5D6O)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:349
                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhh..eeee...ee.....ee...eeeeeee.........eeeee......hhhhhhhh............eeeee...............hhhhhhhhh...hhhhhhhhhhhhhhhhhh.....eeeeehhhhhhhhhhhhhhhhhh.eeeee......hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.hhhhhhh.hhhhhhhh...eeee.........hhhhhhhhhh.....ee......hhhhhhhh...hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5d6o A   1 MLDNSFYTAEVQGPYETASIGRLELEEGGVIEDCWLAYATAGTLNEDKSNAILIPTWYSGTHQTWFQQYIGTDHALDPSKYFIISINQIGNGLSVSPANTADDSISMSKFPNVRIGDDVVAQDRLLRQEFGITELFAVVGGSMGAQQTYEWIVRFPDQVHRAAPIAGTAKNTPHDFIFTQTLNETVEADPGFNGGEYSSHEEVADGLRRQSHLWAAMGFSTEFWKQEAWRRLGLESKESVLADFLDPLFMSMDPNTLLNNAWKWQHGDVSRHTGGDLAAALGRVKAKTFVMPISEDMFFPVRDCAAEQALIPGSELRVIEDIAGHLGLFNVSENYIPQIDKNLKELFES 349
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340         


Chain B from PDB  Type:PROTEIN  Length:349
                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhh..eeee...ee.....ee...eeeeeee.........eeeee......hhhhhhhh............eeeee...............hhhhhhhhh...hhhhhhhhhhhhhhhhhh.....eeeeehhhhhhhhhhhhhhhhhh.eeeee......hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.hhhhhhh.hhhhhhh....eeee.........hhhhhhhhhh.....ee......hhhhhhhh...hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5d6o B   1 MLDNSFYTAEVQGPYETASIGRLELEEGGVIEDCWLAYATAGTLNEDKSNAILIPTWYSGTHQTWFQQYIGTDHALDPSKYFIISINQIGNGLSVSPANTADDSISMSKFPNVRIGDDVVAQDRLLRQEFGITELFAVVGGSMGAQQTYEWIVRFPDQVHRAAPIAGTAKNTPHDFIFTQTLNETVEADPGFNGGEYSSHEEVADGLRRQSHLWAAMGFSTEFWKQEAWRRLGLESKESVLADFLDPLFMSMDPNTLLNNAWKWQHGDVSRHTGGDLAAALGRVKAKTFVMPISEDMFFPVRDCAAEQALIPGSELRVIEDIAGHLGLFNVSENYIPQIDKNLKELFES 349
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340         


Chain C from PDB  Type:PROTEIN  Length:349
                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhh..eeee...ee.....ee...eeeeeee.........eeeee......hhhhhhhh............eeeee...............hhhhhhhhh...hhhhhhhhhhhhhhhhhh.....eeeeehhhhhhhhhhhhhhhhhh.eeeee......hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.hhhhhhh.hhhhhhh....eeee.........hhhhhhhhhh.....ee......hhhhhhhh...hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5d6o C   1 MLDNSFYTAEVQGPYETASIGRLELEEGGVIEDCWLAYATAGTLNEDKSNAILIPTWYSGTHQTWFQQYIGTDHALDPSKYFIISINQIGNGLSVSPANTADDSISMSKFPNVRIGDDVVAQDRLLRQEFGITELFAVVGGSMGAQQTYEWIVRFPDQVHRAAPIAGTAKNTPHDFIFTQTLNETVEADPGFNGGEYSSHEEVADGLRRQSHLWAAMGFSTEFWKQEAWRRLGLESKESVLADFLDPLFMSMDPNTLLNNAWKWQHGDVSRHTGGDLAAALGRVKAKTFVMPISEDMFFPVRDCAAEQALIPGSELRVIEDIAGHLGLFNVSENYIPQIDKNLKELFES 349
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340         


Chain D from PDB  Type:PROTEIN  Length:349
                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhh..eeee...ee.....ee...eeeeeee.........eeeee......hhhhhhhh............eeeee...............hhhhhhhhh...hhhhhhhhhhhhhhhhhh.....eeeeehhhhhhhhhhhhhhhhhh.eeeee......hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.hhhhhhh.hhhhhhh....eeee.........hhhhhhhhhh.....ee......hhhhhhhh...hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5d6o D   1 MLDNSFYTAEVQGPYETASIGRLELEEGGVIEDCWLAYATAGTLNEDKSNAILIPTWYSGTHQTWFQQYIGTDHALDPSKYFIISINQIGNGLSVSPANTADDSISMSKFPNVRIGDDVVAQDRLLRQEFGITELFAVVGGSMGAQQTYEWIVRFPDQVHRAAPIAGTAKNTPHDFIFTQTLNETVEADPGFNGGEYSSHEEVADGLRRQSHLWAAMGFSTEFWKQEAWRRLGLESKESVLADFLDPLFMSMDPNTLLNNAWKWQHGDVSRHTGGDLAAALGRVKAKTFVMPISEDMFFPVRDCAAEQALIPGSELRVIEDIAGHLGLFNVSENYIPQIDKNLKELFES 349
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5D6O)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5D6O)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5D6O)

(-) Gene Ontology  (6, 6)

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        Q8NS43_CORGL | Q8NS43: 5d7b

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