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(-) Description

Title :  CRYSTAL STRUCTURE OF AN EF-HAND CALCIUM BINDING DOMAIN OF CAP-BINDING PROTEIN COMPLEX-INTERACTING PROTEIN 1 (EFCAB6) FROM HOMO SAPIENS AT 2.00 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg), Partnership For Receptor Signaling Code Biology, Partnership For Nuclear Rec Signaling Code Biology (Nhrs)
Date :  11 Aug 15  (Deposition) - 02 Sep 15  (Release) - 02 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-Biology, Metal Binding Protein, Partnership For Nuclear Receptor Signaling Code Biology, Nhrs (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg), Partnership For Nuclear Receptor Signaling Code Biology
Crystal Structure Of An Ef-Hand Calcium Binding Domain Of Cap-Binding Protein Complex-Interacting Protein 1 (Efcab6) From Homo Sapiens At 2. 00 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 6
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: PB1
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 1160-1260
    Gene: EFCAB6, DJBP, KIAA1672
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CAP-BINDING PROTEIN COMPLEX-INTERACTING PROTEIN 1,DJ-1- BINDING PROTEIN,DJBP

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 24)

Asymmetric Unit (2, 24)
No.NameCountTypeFull Name
1MSE9Mod. Amino AcidSELENOMETHIONINE
2SO415Ligand/IonSULFATE ION
Biological Unit 1 (2, 6)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
2SO44Ligand/IonSULFATE ION
Biological Unit 2 (2, 6)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
2SO44Ligand/IonSULFATE ION
Biological Unit 3 (2, 4)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
2SO42Ligand/IonSULFATE ION
Biological Unit 4 (2, 8)
No.NameCountTypeFull Name
1MSE3Mod. Amino AcidSELENOMETHIONINE
2SO45Ligand/IonSULFATE ION

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:0 , ALA A:1008 , THR A:1009 , HOH A:1359 , GLY B:0 , ALA B:1008 , THR B:1009 , ALA B:1010binding site for residue SO4 A 1201
02AC2SOFTWAREASN A:1075 , ALA A:1076 , LYS A:1081 , HOH A:1344 , HOH A:1362binding site for residue SO4 A 1202
03AC3SOFTWAREGLU A:1063 , ARG A:1067 , HOH A:1317 , TYR C:1026 , HIS C:1027binding site for residue SO4 A 1203
04AC4SOFTWARELEU A:1015 , HIS A:1019 , ARG A:1088 , HOH A:1315binding site for residue SO4 A 1204
05AC5SOFTWAREALA B:1028 , ARG B:1055 , ARG B:1056binding site for residue SO4 B 1201
06AC6SOFTWARETYR B:1026 , HIS B:1027 , HOH B:1301 , HOH B:1315 , HOH B:1331binding site for residue SO4 B 1202
07AC7SOFTWAREGLY B:0 , ALA B:1010 , GLU B:1063 , GLN B:1064 , ARG B:1067 , HOH B:1318 , HOH B:1326 , HOH B:1348binding site for residue SO4 B 1203
08AC8SOFTWAREASN B:1075 , ALA B:1076 , LYS B:1081binding site for residue SO4 B 1204
09AC9SOFTWAREPRO C:1073 , LYS C:1081 , ASP C:1084 , ARG C:1088 , HOH C:1316 , HOH C:1324 , HOH C:1355binding site for residue SO4 C 1201
10AD1SOFTWARETHR C:1041 , THR C:1043 , ASN C:1075 , LYS C:1077 , ARG C:1079 , HOH C:1312 , HOH C:1336binding site for residue SO4 C 1202
11AD2SOFTWAREHIS D:1019 , ARG D:1088binding site for residue SO4 D 1201
12AD3SOFTWARELYS D:1077 , HOH D:1321 , HOH D:1323 , HOH D:1353binding site for residue SO4 D 1202
13AD4SOFTWARELYS A:1077 , ASN D:1075 , ALA D:1076 , LYS D:1081 , HOH D:1321binding site for residue SO4 D 1203
14AD5SOFTWAREARG C:1046 , GLU C:1047 , ASP D:1062 , GLU D:1063 , HOH D:1318binding site for residue SO4 D 1204
15AD6SOFTWAREHIS D:1025 , HIS D:1027 , ALA D:1028 , HOH D:1315 , HOH D:1348binding site for residue SO4 D 1205

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5D67)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5D67)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5D67)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5D67)

(-) Exons   (0, 0)

(no "Exon" information available for 5D67)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:86
                                                                                                                       
               SCOP domains -------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eehhhhhhhhhhhhh...hhhhhhhhhhh........eehhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------- Transcript
                5d67 A    0 GATADRDILARLHKAVTSHYHAITQEFENFDTmKTNTISREEFRAICNRRVQILTDEQFGRLWNEmPVNAKGRLKYPDFLSRFSSE 1092
                            ||    1016      1026      1036  |   1046      1056      1066     |1076      1086      
                            ||                           1039-MSE                         1072-MSE                
                            0|                                                                                    
                          1008                                                                                    


Chain B from PDB  Type:PROTEIN  Length:85
                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eehhhhhhhhhhhhh...hhhhhhhhhhh........eehhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------- Transcript
                5d67 B    0 GATADRDILARLHKAVTSHYHAITQEFENFDTmKTNTISREEFRAICNRRVQILTDEQFGRLWNEmPVNAKGRLKYPDFLSRFSS 1091
                            ||    1016      1026      1036  |   1046      1056      1066     |1076      1086     
                            0|                           1039-MSE                         1072-MSE               
                          1008                                                                                   


Chain C from PDB  Type:PROTEIN  Length:85
                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eehhhhhhhhhhhhh...hhhhhhhhhhh........eehhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------- Transcript
                5d67 C    0 GATADRDILARLHKAVTSHYHAITQEFENFDTmKTNTISREEFRAICNRRVQILTDEQFGRLWNEmPVNAKGRLKYPDFLSRFSS 1091
                            ||    1016      1026      1036  |   1046      1056      1066     |1076      1086     
                            0|                           1039-MSE                         1072-MSE               
                          1008                                                                                   


Chain D from PDB  Type:PROTEIN  Length:95
                                                                                                                                
               SCOP domains ----------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhh.....eehhhhhhhhhhhhh...hhhhhhhhhhhh.......eehhhhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                5d67 D 1010 ADRDILARLHKAVTSHYHAITQEFENFDTmKTNTISREEFRAICNRRVQILTDEQFGRLWNEmPVNAKGRLKYPDFLSRFSSETAATPmATGDSA 1104
                                  1019      1029      1039      1049      1059      1069  |   1079      1089      1099     
                                                      1039-MSE                         1072-MSE                  1098-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5D67)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5D67)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5D67)

(-) Gene Ontology  (5, 5)

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