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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN HSF1 WITH SATELLITE III REPEAT DNA
 
Authors :  T. Neudegger, J. Verghese, M. Hayer-Hartl, F. U. Hartl, A. Bracher
Date :  11 Aug 15  (Deposition) - 30 Dec 15  (Release) - 10 Feb 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.55
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Protein-Dna Complex, Double Helix, Helix-Turn-Helix, Transcription- Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Neudegger, J. Verghese, M. Hayer-Hartl, F. U. Hartl, A. Bracher
Structure Of Human Heat-Shock Transcription Factor 1 In Complex With Dna.
Nat. Struct. Mol. Biol. V. 23 140 2016
PubMed-ID: 26727489  |  Reference-DOI: 10.1038/NSMB.3149

(-) Compounds

Molecule 1 - HEAT SHOCK FACTOR PROTEIN 1
    Chains: B, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PPROEX-HTB
    Expression System Taxid: 469008
    Expression System Variant: CODONPLUS-RIL
    Expression System Vector Type: PLASMID
    Fragment: DNA BINDING DOMAIN, UNP RESIDUES 1-120
    Gene: HSF1, HSTF1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: HSF 1,HEAT SHOCK TRANSCRIPTION FACTOR 1,HSTF 1
 
Molecule 2 - DNA
    Chains: A
    Engineered: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synthetic: YES
 
Molecule 3 - DNA
    Chains: C
    Engineered: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1MG2Ligand/IonMAGNESIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU B:25 , VAL B:26 , ASP B:28 , THR B:31 , ASP B:32 , ILE B:35binding site for residue MG B 201
2AC2SOFTWARELEU D:25 , VAL D:26 , ASP D:28 , THR D:31 , ASP D:32 , ILE D:35binding site for residue MG D 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5D5V)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5D5V)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5D5V)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5D5V)

(-) Exons   (0, 0)

(no "Exon" information available for 5D5V)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:DNA  Length:12
                                            
                 5d5v A   1 CGGAATGGAATG  12
                                    10  


Chain B from PDB  Type:PROTEIN  Length:96
                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhh..eee......eeeehhhhhhhhhhhhhh...hhhhhhhhhhhh..eee...eeeee.......hhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------ Transcript
                 5d5v B  14 NVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHDDTEFQHPCFLRGQEQLLENIKRKVT 120
                                    23        33        43        53        63        73        83|      104       114      
                                                                                                83|                         
                                                                                                 95                         


Chain C from PDB  Type:DNA  Length:12
                                            
                 5d5v C   1 CATTCCATTCCG  12
                                    10  


Chain D from PDB  Type:PROTEIN  Length:107
                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhh..eee......eeeehhhhhhhhhhhhhh...hhhhhhhhhhhh..eee.............eeeee.......hhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                 5d5v D  13 SNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGVKPERDDTEFQHPCFLRGQEQLLENIKRKVT 120
                                    22        32        42        52        62        72        82     || 93       103       113       
                                                                                                      88|                              
                                                                                                       90
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5D5V)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5D5V)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5D5V)

(-) Gene Ontology  (34, 34)

Asymmetric/Biological Unit(hide GO term definitions)

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  HSF1_HUMAN | Q00613
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HSF1_HUMAN | Q00613: 2ldu 5d5u 5hdg 5hdn

(-) Related Entries Specified in the PDB File

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