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(-) Description

Title :  THE CRYSTAL STRUCTURE OF STPR FROM BOMBYX MORI IN COMPLEX WITH 13-BP DNA DERIVED FROM THE +290 SITE OF FIBROIN GENE
 
Authors :  W. Cheng
Date :  05 Aug 15  (Deposition) - 23 Mar 16  (Release) - 23 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Protein-Dna Complex, All A-Helix, Major Groove Binding Pattern, Transcription-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Y. Yu, W. Cheng, K. Zhou, W. F. Li, H. M. Yu, X. Gao, X. Shen, Q. Wu, Y. Chen, C. Z. Zhou
Structures Of An All-Alpha Protein Running Along The Dna Major Groove.
Nucleic Acids Res. 2016
PubMed-ID: 26939889  |  Reference-DOI: 10.1093/NAR/GKW133

(-) Compounds

Molecule 1 - FIBROIN-MODULATOR-BINDING PROTEIN-1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 99-193
    Gene: FMBP-1, FMBP-1
    Organism Common: SILK MOTH
    Organism Scientific: BOMBYX MORI
    Organism Taxid: 7091
    Synonym: UNCHARACTERIZED PROTEIN
 
Molecule 2 - DNA (26-MER)
    Chains: B
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric/Biological Unit (1, 3)
No.NameCountTypeFull Name
1MSE3Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 5D23)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5D23)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5D23)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5D23)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5D23)

(-) Exons   (0, 0)

(no "Exon" information available for 5D23)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:64
                                                                                                
               SCOP domains ---------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------- Transcript
                 5d23 A 127 RATRLKRmSEYAAKRLSSETREQRAIRLARmSAYAARRLANETPAQRQARLLRmSAYAAKRQAS 190
                                   136       146       156|      166       176   |   186    
                                 134-MSE                157-MSE                180-MSE      


Chain B from PDB  Type:DNA  Length:26
                                                          
                 5d23 B -17 GAATCTATGTAAATTTACATAGATTC  17
                                    -8  ||    11      
                                       -5|            
                                         5
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5D23)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5D23)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5D23)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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  5d23
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q5FBS0_BOMMO | Q5FBS0: 1vd7 1vd8 1vd9 1vda 1vdb 1wnk 1wnm 1wnn 5d2q 5d2s

(-) Related Entries Specified in the PDB File

5d2q 5d2s