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(-) Description

Title :  CRYSTAL STRUCTURE OF STPR FROM BOMBYX MORI IN COMPLEX WITH 18-BP DNA CONTAINING FOUR REPETITIVE UNITS OF ATAC
 
Authors :  W. Cheng
Date :  06 Aug 15  (Deposition) - 23 Mar 16  (Release) - 23 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Protein-Dna Complex, All A-Helix, Dna Major Groove Binding, Transcription-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Y. Yu, W. Cheng, K. Zhou, W. F. Li, H. M. Yu, X. Gao, X. Shen, Q. Wu, Y. Chen, C. Z. Zhou
Structures Of An All-Alpha Protein Running Along The Dna Major Groove.
Nucleic Acids Res. 2016
PubMed-ID: 26939889  |  Reference-DOI: 10.1093/NAR/GKW133

(-) Compounds

Molecule 1 - FIBROIN-MODULATOR-BINDING PROTEIN-1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 99-193
    Gene: FMBP-1, FMBP-1
    Organism Common: SILK MOTH
    Organism Scientific: BOMBYX MORI
    Organism Taxid: 7091
    Synonym: UNCHARACTERIZED PROTEIN
 
Molecule 2 - DNA (36-MER)
    Chains: B
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5D2S)

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5D2S)

 Sequence-Structure Mapping

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:91
                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                 5d2s A  99 ETSEERAARLAKMSAYAAQRLANESPEQRATRLKRMSEYAAKRLSSETREQRAIRLARMSAYAARRLANETPAQRQARLLRMSAYAAKRQA 189
                                   108       118       128       138       148       158       168       178       188 


Chain B from PDB  Type:DNA  Length:36
                                                                    
                 5d2s B -22 TGTATGTATGTATGTATGCATACATACATACATACA  22
                                   -13       ||6        16      
                                            -5|                 
                                              5
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q5FBS0_BOMMO | Q5FBS0: 1vd7 1vd8 1vd9 1vda 1vdb 1wnk 1wnm 1wnn 5d23 5d2q

(-) Related Entries Specified in the PDB File

5d23 5d2q