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(-) Description

Title :  STRUCTURE OF S. CEREVISIAE HRR25:MAM1 COMPLEX, FORM 2
 
Authors :  Q. Ye, K. D. Corbett
Date :  31 Jul 15  (Deposition) - 03 Aug 16  (Release) - 07 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.89
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,C  (1x)
Biol. Unit 2:  B,D  (1x)
Keywords :  Casein Kinase, Monopolin, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Q. Ye, S. N. Ur, T. Y. Su, K. D. Corbett
Structure Of The Saccharomyces Cerevisiae Hrr25:Mam1 Monopolin Subcomplex Reveals A Novel Kinase Regulator.
Embo J. V. 35 2139 2016
PubMed-ID: 27491543  |  Reference-DOI: 10.15252/EMBJ.201694082

(-) Compounds

Molecule 1 - CASEIN KINASE I HOMOLOG HRR25
    Chains: A, B
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: HRR25, YPL204W
    Mutation: YES
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / S288C)
    Organism Taxid: 559292
    Other Details: SURFACE LYS RESIDUES METHYLATED (MLY)
    Strain: ATCC 204508 / S288C
 
Molecule 2 - MONOPOLIN COMPLEX SUBUNIT MAM1
    Chains: C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: MAM1, YER106W
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / S288C)
    Organism Taxid: 559292
    Other Details: SURFACE LYS RESIDUES METHYLATED (MLY)
    Strain: ATCC 204508 / S288C
    Synonym: MONOPOLAR MICROTUBULE ATTACHMENT DURING MEIOSIS 1 PROTEIN 1

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A C 
Biological Unit 2 (1x):  B D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 24)

Asymmetric Unit (2, 24)
No.NameCountTypeFull Name
1MLY22Mod. Amino AcidN-DIMETHYL-LYSINE
2ZN2Ligand/IonZINC ION
Biological Unit 1 (1, 11)
No.NameCountTypeFull Name
1MLY11Mod. Amino AcidN-DIMETHYL-LYSINE
2ZN-1Ligand/IonZINC ION
Biological Unit 2 (1, 11)
No.NameCountTypeFull Name
1MLY11Mod. Amino AcidN-DIMETHYL-LYSINE
2ZN-1Ligand/IonZINC ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS C:114 , HIS C:116 , CYS C:119 , CYS C:152binding site for residue ZN C 201
2AC2SOFTWARECYS D:114 , HIS D:116 , CYS D:119 , CYS D:152binding site for residue ZN D 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CZO)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5CZO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CZO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CZO)

(-) Exons   (0, 0)

(no "Exon" information available for 5CZO)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:374
                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee...eeeeeeee....eeeeeeee.....eeeeeeee......hhhhhhhhhhhh........eeeeeee..eeeeeee.eeeehhhhhhhh....hhhhhhhhhhhhhhhhhhhhh..ee....hhh.eeee.hhhh..eee......ee.......................hhhhhh....hhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhh.....hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5czo A   0 AMDLRVGRkFRIGRKIGSGSFGDIYHGTNLISGEEVAIRLESIRSRHPQLDYESRVYRYLSGGVGIPFIRWFGREGEYNAMVIDLLGPSLEDLFNYCHRRFSFKTVIMLALQMFCRIQYIHGRSFIHRDIKPDNFLMGVGRRGSTVHVIDFGLSkkYRDFNTHRHIPYRENKSLTARYASVNTHLGIEQSRRDDLESLGYVLIYFCKGSLPWQGLKATTKKQKYDRIMEkKLNVSVETLCSGLPLEFQEYMAYCkNLKFDEkPDYLFLARLFKDLSIKLEYHNDHLFDWTMLRYTKAMVEKQRDLLIEKGTDNKSETFNKIkLLAMKKFPTHFHYYkNEDKHNPSPEEIkQQTILNNNAASSLPEELLNALDKG 389
                                    |9        19        29        39        49        59        69        79        89        99       109       119       129       139       149    || 159       169   ||  181       191       201       211       221       231       241       251    |  261 |     271       281       291       301       311|      335 |     345      |355       365       375       385    
                                    8-MLY                                                                                                                                           154-MLY            173|                                                    231-MLY                  256-MLY  |                                             311|        337-MLY        352-MLY      365-MLY                    
                                                                                                                                                                                     155-MLY            176                                                                                    263-MLY                                          326                                                               


Chain B from PDB  Type:PROTEIN  Length:374
                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee...eeeeeeeeee..eeeeeeee.....eeeeeeee......hhhhhhhhhhhh........eeeeeee..eeeeeee.eeeehhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.ee........eeee.hhhh..eee......ee.........................hhhhhh....hhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhh.....hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5czo B   0 AMDLRVGRkFRIGRKIGSGSFGDIYHGTNLISGEEVAIRLESIRSRHPQLDYESRVYRYLSGGVGIPFIRWFGREGEYNAMVIDLLGPSLEDLFNYCHRRFSFKTVIMLALQMFCRIQYIHGRSFIHRDIKPDNFLMGVGRRGSTVHVIDFGLSkkYRDFNTHRHIPYRENKSLTGTARYASVNTHLGIEQSRRDDLESLGYVLIYFCKGSLPWQGLKKYDRIMEkKLNVSVETLCSGLPLEFQEYMAYCkNLKFDEkPDYLFLARLFKDLSIKLEYHNDHLFDWTMLRYTKAMVEKQRDLLIEKGDLNANSTDNKSETFNKIkLLAMKKFPTHFHYYkNEDKHNPSPEEIkQQTILNNNAASSLPEELLNALD 387
                                    |9        19        29        39        49        59        69        79        89        99       109       119       129       139       149    || 159       169       179       189       199       209       225     | 235       245       255|      265       275       285       295       305       315 ||    333   |   343       353       363 |     373       383    
                                    8-MLY                                                                                                                                           154-MLY                                                        217|      |                      256-MLY  |                                                   317|        337-MLY        352-MLY      365-MLY                  
                                                                                                                                                                                     155-MLY                                                        224      |                             263-MLY                                                326                                                             
                                                                                                                                                                                                                                                           231-MLY                                                                                                                                                


Chain C from PDB  Type:PROTEIN  Length:101
                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhh........hhhhhhh..hhhhhhh...........hhhhhhhhhhhhhhhh....................hhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------- Transcript
                 5czo C  91 CLTRSNLKKLQEKIFDRELNDIACDHCLCSTENRRDIKYSRLWFLFELEMSENWNENLRLSCYNkYVYSAIDESWkMENILLKEQEKHYEYFPIGQLLIPN 191
                                   100       110       120       130       140       150    |  160     | 170       180       190 
                                                                                          155-MLY    166-MLY                     


Chain D from PDB  Type:PROTEIN  Length:101
                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhh........hhhhhhhh.hhhhhhhhhhhh......hhhhhhhhhhhhhhhh....................hhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------- Transcript
                 5czo D  91 CLTRSNLKKLQEKIFDRELNDIACDHCLCSTENRRDIKYSRLWFLFELEMSENWNENLRLSCYNkYVYSAIDESWkMENILLKEQEKHYEYFPIGQLLIPN 191
                                   100       110       120       130       140       150    |  160     | 170       180       190 
                                                                                          155-MLY    166-MLY
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CZO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CZO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CZO)

(-) Gene Ontology  (45, 48)

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  HRR25_YEAST | P29295
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  MAM1_YEAST | P40065
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  2.7.11.1
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 Related Entries

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        HRR25_YEAST | P29295: 4xhl 5cyz
        MAM1_YEAST | P40065: 5cyz 5ktb

(-) Related Entries Specified in the PDB File

5cyz