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(-) Description

Title :  THE COMPLEX STRUCTURE OF VINK WITH VINL
 
Authors :  A. Miyanaga, S. Iwasawa, Y. Shinohara, F. Kudo, T. Eguchi
Date :  31 Jul 15  (Deposition) - 03 Feb 16  (Release) - 30 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.34
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Transferase, Acyl Carrier Protein, Polyketide Biosynthesis (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Miyanaga, S. Iwasawa, Y. Shinohara, F. Kudo, T. Eguchi
Structure-Based Analysis Of The Molecular Interactions Between Acyltransferase And Acyl Carrier Protein In Vicenistatin Biosynthesis.
Proc. Natl. Acad. Sci. Usa V. 113 1802 2016
PubMed-ID: 26831085  |  Reference-DOI: 10.1073/PNAS.1520042113

(-) Compounds

Molecule 1 - MALONYL-COA-[ACYL-CARRIER-PROTEIN] TRANSACYLASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PCOLD I
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: VINK
    Mutation: YES
    Organism Scientific: STREPTOMYCES HALSTEDII
    Organism Taxid: 1944
 
Molecule 2 - ACYL-CARRIER-PROTEIN
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: VINL
    Organism Scientific: STREPTOMYCES HALSTEDII
    Organism Taxid: 1944

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
11N21Ligand/Ion1,1'-ETHANE-1,2-DIYLDIPYRROLIDINE-2,5-DIONE
2PNS1Ligand/Ion4'-PHOSPHOPANTETHEINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREMET A:28 , PRO A:30 , TYR A:72 , SER A:106 , GLU A:109 , LYS A:110 , MET A:135 , TYR A:209 , MET A:211 , HIS A:216 , CYS A:266 , PHE A:267 , SER A:295 , SER B:36binding site for residues PNS B 101 and 1N2 B 102

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CZD)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Arg A:212 -Pro A:213

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CZD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CZD)

(-) Exons   (0, 0)

(no "Exon" information available for 5CZD)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:301
                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee......hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh.....eeee..hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhh...eeeeeeee..eeeeeee..hhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhhh............ee......ee.hhhhhhhhhhhh....eehhhhhhhhhhh...eeeee........hhhhhh..eeeeehhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5czd A  20 ATAMLFPGMGPAAFSDVGRFMVTNRYTRELLAEADDTLGYSLVDRFRQAEGDYSEYAQIAFLVNCVALARWAEQTMDLTPRICAGASFGEKSVAAYSGALTFADAVRMTAGLARCMDEYFRTEHLGVVTHSFVRAPRERLDEILAELDERGEWHEISCHIDHDFFMLTLHERNSVWLEGRLRSVGAMPLYAMRPPMHAAAFGGLRDKAEEEVIAPLTFHDPTLPVVADQDGKVLTTGDEVRTMLLECFVRPLRWPDVISSLQDQGVTRVCVAGPDSLFGRVGTTTRAFEVIAATPRLALQP 320
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319 


Chain B from PDB  Type:PROTEIN  Length:77
                                                                                                             
               SCOP domains ----------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhh......................hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------- Transcript
                 5czd B   1 MWDAQFENLLRRYLPFLSADQPLEQDINLRDIGLDSLGTVELLSELENTYDVHFQDEALTKETFETPGVLWKTLSQM  77
                                    10        20        30        40        50        60        70
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CZD)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CZD)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CZD)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Arg A:212 - Pro A:213   [ RasMol ]  
 

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  5czd
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  Q76KY4_STRHA | Q76KY4
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q76KY5_STRHA | Q76KY5: 5czc

(-) Related Entries Specified in the PDB File

5czc