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(-) Description

Title :  THE STRUCTURE OF VINK
 
Authors :  A. Miyanaga, S. Iwasawa, Y. Shinohara, F. Kudo, T. Eguchi
Date :  31 Jul 15  (Deposition) - 03 Feb 16  (Release) - 30 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Transferase, Polyketide Biosynthesis (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Miyanaga, S. Iwasawa, Y. Shinohara, F. Kudo, T. Eguchi
Structure-Based Analysis Of The Molecular Interactions Between Acyltransferase And Acyl Carrier Protein In Vicenistatin Biosynthesis.
Proc. Natl. Acad. Sci. Usa V. 113 1802 2016
PubMed-ID: 26831085  |  Reference-DOI: 10.1073/PNAS.1520042113

(-) Compounds

Molecule 1 - MALONYL-COA-[ACYL-CARRIER-PROTEIN] TRANSACYLASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PCOLD I
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: VINK
    Organism Scientific: STREPTOMYCES HALSTEDII
    Organism Taxid: 1944

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
1CA2Ligand/IonCALCIUM ION
2GOL2Ligand/IonGLYCEROL
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2GOL1Ligand/IonGLYCEROL
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2GOL1Ligand/IonGLYCEROL

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:77 , PHE A:107 , LYS A:110 , MET A:211 , PRO A:213binding site for residue GOL A 401
2AC2SOFTWAREARG A:169 , GLU A:171 , HOH A:617binding site for residue CA A 402
3AC3SOFTWAREPHE B:107 , LYS B:110 , MET B:215 , HOH B:515 , HOH B:624 , HOH B:627binding site for residue GOL B 401
4AC4SOFTWAREGLU B:190 , HOH B:534 , HOH B:672 , HOH B:678 , HOH B:691 , HOH B:692binding site for residue CA B 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CZC)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Arg A:212 -Pro A:213
2Arg B:212 -Pro B:213

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CZC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CZC)

(-) Exons   (0, 0)

(no "Exon" information available for 5CZC)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:300
                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee......hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh....eeee..hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhh...eeeeeeee..eeeeeee..hhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhhh............ee......ee.hhhhhhhhhhhh....eehhhhhhhhhhh.eeeeeee........hhhhhh..eeeeehhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5czc A  19 GATAMLFPGMGPAAFSDVGRFMVTNRYTRELLAEADDTLGYSLVDRFRQAEGDYSEYAQIAFLVNCVALARWAEQTMDLTPRICAGASFGEKSVAAYSGALTFADAVRMTAGLARCMDEYFRTEHLGVVTHSFVRAPRERLDEILAELDERGEWHEISCHIDHDFFMLTLHERNSVWLEGRLRSVGAMPLYAMRPPMHAAAFGGLRDKAEEEVIAPLTFHDPTLPVVADQDGKVLTTGDEVRTMLLESFVRPLRWPDVISSLQDQGVTRVCVAGPDSLFGRVGTTTRAFEVIAATPRLAL 318
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318


Chain B from PDB  Type:PROTEIN  Length:301
                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee......hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh.....eeee..hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhh...eeeeeeee..eeeeeee..hhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhhh............ee......ee.hhhhhhhhhhhhh...eehhhhhhhhhhh.eeeeeee........hhhhhhhheeeeehhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5czc B  19 GATAMLFPGMGPAAFSDVGRFMVTNRYTRELLAEADDTLGYSLVDRFRQAEGDYSEYAQIAFLVNCVALARWAEQTMDLTPRICAGASFGEKSVAAYSGALTFADAVRMTAGLARCMDEYFRTEHLGVVTHSFVRAPRERLDEILAELDERGEWHEISCHIDHDFFMLTLHERNSVWLEGRLRSVGAMPLYAMRPPMHAAAFGGLRDKAEEEVIAPLTFHDPTLPVVADQDGKVLTTGDEVRTMLLESFVRPLRWPDVISSLQDQGVTRVCVAGPDSLFGRVGTTTRAFEVIAATPRLALQ 319
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CZC)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CZC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CZC)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)

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  5czc
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        Q76KY5_STRHA | Q76KY5: 5czd

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