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(-) Description

Title :  SYK CATALYTIC DOMAIN COMPLEXED WITH NAPHTHYRIDINE INHIBITOR
 
Authors :  G. Thoma, S. Veenstra, R. Strang, J. Blanz, E. Vangrevelinghe, J. Bergh C. C. Lee, H. -G. Zerwes
Date :  29 Jul 15  (Deposition) - 16 Sep 15  (Release) - 14 Oct 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Transferase/Transferase Inhibitor, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Thoma, S. Veenstra, R. Strang, J. Blanz, E. Vangrevelinghe, J. Berghausen, C. C. Lee, H. G. Zerwes
Orally Bioavailable Syk Inhibitors With Activity In A Rat Pk/Pd Model.
Bioorg. Med. Chem. Lett. V. 25 4642 2015
PubMed-ID: 26320624  |  Reference-DOI: 10.1016/J.BMCL.2015.08.037

(-) Compounds

Molecule 1 - TYROSINE-PROTEIN KINASE SYK
    Chains: A
    EC Number: 2.7.10.2
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: SF9
    Expression System Plasmid: PFASTBAC1
    Expression System Taxid: 7108
    Fragment: UNP RESIDUES 356-635
    Gene: SYK
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: SPLEEN TYROSINE KINASE,P72-SYK

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric/Biological Unit (3, 3)
No.NameCountTypeFull Name
155U1Ligand/IonN-{7-[4-(DIMETHYLAMINO)PHENYL]-1,6-NAPHTHYRIDIN-5-YL}PROPANE-1,3-DIAMINE
2CL1Ligand/IonCHLORIDE ION
3GOL1Ligand/IonGLYCEROL

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:453 , VAL A:503 , THR A:504 , GLU A:586 , TYR A:611 , HOH A:806 , HOH A:814 , HOH A:824binding site for residue GOL A 701
2AC2SOFTWAREPRO A:535 , VAL A:536 , LYS A:537binding site for residue CL A 702
3AC3SOFTWARELEU A:377 , ALA A:400 , GLU A:449 , MET A:450 , ALA A:451 , GLU A:452 , GLY A:454 , PRO A:455 , ARG A:498 , ASN A:499 , LEU A:501 , ASP A:512 , HOH A:900binding site for residue 55U A 703

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CXZ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5CXZ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CXZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CXZ)

(-) Exons   (0, 0)

(no "Exon" information available for 5CXZ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:269
                                                                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhh.eeeeeeeeee...eeeeeeeee....eeeeeeeee...hhhhhhhhhhhhhh........eeeeee...eeeeee....eehhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eeeee..eeee......ee......eee......hhhhhhhhhhhhheeehhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cxz A 363 VYLDRKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNALKDELLAEANVMQQLDNPYIVRMIGICEAESWMLVMEMAELGPLNKYLQQNRHVTDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYDVVNHH 637
                                   372       382       392       402   ||  417       427       437       447       457       467       477       487       497       507       517       527   ||  538       548       558       568       578       588       598       608       618       628         
                                                                     406|                                                                                                                    531|                                                                                                        
                                                                      412                                                                                                                     533
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CXZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CXZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CXZ)

(-) Gene Ontology  (87, 87)

Asymmetric/Biological Unit(hide GO term definitions)

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  5cxz
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  KSYK_HUMAN | P43405
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  2.7.10.2
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        KSYK_HUMAN | P43405: 1a81 1csy 1csz 1xba 1xbb 1xbc 3buw 3emg 3fqe 3fqh 3fqs 3srv 3tub 3tuc 3tud 3vf8 3vf9 4dfl 4dfn 4f4p 4fl1 4fl2 4fl3 4fyn 4fyo 4fz6 4fz7 4gfg 4i0r 4i0s 4i0t 4puz 4pv0 4px6 4rss 4rx7 4rx8 4rx9 4wnm 4xg2 4xg3 4xg4 4xg6 4xg7 4xg8 4xg9 4yjo 4yjp 4yjq 4yjr 4yjs 4yjt 4yju 4yjv 5c26 5c27 5cxh 5cy3 5ghv 5lma 5lmb 5t68 5tiu 5tr6 5tt7

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5CXZ)