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(-) Description

Title :  STRUCTURAL AND BIOPHYSICAL CHARACTERIZATION OF THE SYK ACTIVATION SWITCH
 
Authors :  U. Graedler, D. Schwarz, V. Dresing, M. Musil, J. Bomke, M. Frech, S. Jae T. Rysiok, D. Mueller-Pompalla, A. Wegener
Date :  14 Jun 12  (Deposition) - 28 Nov 12  (Release) - 13 Feb 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.19
Chains :  Asym./Biol. Unit :  A
Keywords :  Transferase, Protein Kinase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  U. Gradler, D. Schwarz, V. Dresing, D. Musil, J. Bomke, M. Frech, H. Greiner, S. Jakel, T. Rysiok, D. Muller-Pompalla, A. Wegener
Structural And Biophysical Characterization Of The Syk Activation Switch.
J. Mol. Biol. V. 425 309 2013
PubMed-ID: 23154170  |  Reference-DOI: 10.1016/J.JMB.2012.11.007

(-) Compounds

Molecule 1 - TYROSINE-PROTEIN KINASE SYK
    Chains: A
    EC Number: 2.7.10.2
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Cell Line: HIGH FIVE
    Expression System Taxid: 7111
    Gene: SYK
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: SPLEEN TYROSINE KINASE, P72-SYK

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1ANP1Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2MG1Ligand/IonMAGNESIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:499 , ASP A:512 , ANP A:702 , HOH A:874 , HOH A:897BINDING SITE FOR RESIDUE MG A 701
2AC2SOFTWARESER A:379 , GLY A:380 , ASN A:381 , PHE A:382 , GLY A:383 , VAL A:385 , ALA A:400 , LYS A:402 , VAL A:433 , GLU A:449 , MET A:450 , ALA A:451 , PRO A:455 , ARG A:498 , ASN A:499 , LEU A:501 , ASP A:512 , TYR A:525 , LYS A:533 , MG A:701 , HOH A:801 , HOH A:807 , HOH A:831 , HOH A:846 , HOH A:874 , HOH A:897 , HOH A:937BINDING SITE FOR RESIDUE ANP A 702

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FL2)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4FL2)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FL2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FL2)

(-) Exons   (0, 0)

(no "Exon" information available for 4FL2)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:555
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhhhhhhhh.....eeeeee.......eeeeeee..eeeeeeeee.....eee.......hhhhhhhhh............ee...........hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhh.......eeeeeee...eeeeeeee..eeeeeeeee.....ee........hhhhhhhhhh.......................hhhhhhhhhhhhhh...........hhh.eeeeeeeeeee..eeeeeeeeee..eeeeeeeeee.hhhhhhhhhhhhhhhhhhhhhh.......eeeeee...eeeeee.....hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.......hhh.eeeee..eeee...hhhhhh..hhhhhhh.....hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh........hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fl2 A   9 SANHLPFFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIERELNGTYAIAGGRTHASPADLCHYHSQESDGLVCLLKKPFNRPQGVQPKTGPFEDLKENLIREYVKQTWNLQGQALEQAIISQKPQLEKLIATTAHEKMPWFHGKISREESEQIVLIGSKTNGKFLIRARDNNGSYALCLLHEGKVLHYRIDKDKTGKLSIPEGKKFDTLWQLVEHYSYKADGLLRVLTVPCQKIGTQREALPMDTEVYESPYADPEEIRPKEVYLDRKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAESWMLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYDVVN 635
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258     ||340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630     
                                                                                                                                                                                                                                                                                         264|                                                                                                                                                                                                                                                                                                          
                                                                                                                                                                                                                                                                                          337
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4FL2)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FL2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FL2)

(-) Gene Ontology  (87, 87)

Asymmetric/Biological Unit(hide GO term definitions)

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  4fl2
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  KSYK_HUMAN | P43405
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  2.7.10.2
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        KSYK_HUMAN | P43405: 1a81 1csy 1csz 1xba 1xbb 1xbc 3buw 3emg 3fqe 3fqh 3fqs 3srv 3tub 3tuc 3tud 3vf8 3vf9 4dfl 4dfn 4f4p 4fl1 4fl3 4fyn 4fyo 4fz6 4fz7 4gfg 4i0r 4i0s 4i0t 4puz 4pv0 4px6 4rss 4rx7 4rx8 4rx9 4wnm 4xg2 4xg3 4xg4 4xg6 4xg7 4xg8 4xg9 4yjo 4yjp 4yjq 4yjr 4yjs 4yjt 4yju 4yjv 5c26 5c27 5cxh 5cxz 5cy3 5ghv 5lma 5lmb 5t68 5tiu 5tr6 5tt7

(-) Related Entries Specified in the PDB File

4fl1 4fl3