5CVW - JenaLib

Title :   CRYSTAL STRUCTURE OF RTX DOMAIN BLOCK V OF ADENYLATE CYCLASE TOXIN FROM BORDETELLA PERTUSSIS

Authors :   L. Motlova, C. Barinka, L. Bumba

Date :   27 Jul 15 (Deposition) - 09 Sep 15 (Release) - 20 Apr 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.25

Chains :   Asym./Biol. Unit : A

Keywords :   Adenylate Cyclase, Rtx Motifs, Calcium Binding, Toxin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   L. Bumba, J. Masin, P. Macek, T. Wald, L. Motlova, I. Bibova, N. Klimova L. Bednarova, V. Veverka, M. Kachala, D. I. Svergun, C. Barinka, P. Seb
Calcium-Driven Folding Of Rtx Domain Beta-Rolls Ratchets Translocation Of Rtx Proteins Through Type I Secretion Ducts.
Mol. Cell V. 62 47 2016
PubMed-ID: 27058787 | Reference-DOI: 10.1016/J.MOLCEL.2016.03.018

Compounds

Molecule 1 - BIFUNCTIONAL HEMOLYSIN/ADENYLATE CYCLASE
	Chains	:	A
	EC Number	:	4.6.1.1
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET42B
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	BLOCK V OF RTX DOMAIN (UNP RESIDUES 1529-1681)
	Gene	:	CYA, CYAA, BN118_0468
	Organism Scientific	:	BORDETELLA PERTUSSIS (STRAIN ATCC 9797 / DSM 5571 / NCTC 10739 / 18323)
	Organism Taxid	:	568706
	Other Details	:	THE LAST 3 AMINO ACIDS ARE TOO FLEXIBLE TO BE FIT IN THE ELECTRON DENSITY MAP.
	Synonym	:	AC-HLY,ACT,CYCLOLYSIN

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 15)

Sites (15, 15)

Asymmetric Unit (15, 15)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP A:1539 , GLY A:1541 , ASN A:1543 , GLY A:1556 , ALA A:1558 , ASP A:1561	binding site for residue CA A 1701
02	AC2	SOFTWARE	GLY A:1557 , ALA A:1558 , GLY A:1559 , ASP A:1561 , GLY A:1574 , ALA A:1576 , ASP A:1579	binding site for residue CA A 1702
03	AC3	SOFTWARE	ASP A:1575 , GLY A:1577 , ASP A:1579 , TYR A:1596 , ASP A:1599	binding site for residue CA A 1703
04	AC4	SOFTWARE	SER A:1530 , ARG A:1532 , ASP A:1534 , GLY A:1547 , ALA A:1549 , ASP A:1552	binding site for residue CA A 1704
05	AC5	SOFTWARE	LEU A:1548 , ALA A:1549 , GLY A:1550 , ASP A:1552 , GLY A:1565 , GLU A:1567 , ASP A:1570	binding site for residue CA A 1705
06	AC6	SOFTWARE	ASP A:1566 , GLY A:1568 , ASP A:1570 , GLY A:1583 , GLN A:1585 , ASP A:1588	binding site for residue CA A 1706
07	AC7	SOFTWARE	GLY A:1584 , GLY A:1586 , ASP A:1588 , GLU A:1603 , GLY A:1605 , ASP A:1609	binding site for residue CA A 1707
08	AC8	SOFTWARE	GLY A:1606 , ASP A:1609 , ARG A:1652 , GLU A:1654 , HOH A:1830 , HOH A:1836	binding site for residue CA A 1708
09	AC9	SOFTWARE	GLY A:1529 , LEU A:1536 , VAL A:1544 , LEU A:1545 , ASN A:1546 , HOH A:1808 , HOH A:1833	binding site for residue EDO A 1709
10	AD1	SOFTWARE	ASP A:1539 , ALA A:1540 , HIS A:1598 , ASP A:1637	binding site for residue EDO A 1710
11	AD2	SOFTWARE	ASP A:1533 , HIS A:1608 , TRP A:1621 , TYR A:1678	binding site for residue GOL A 1711
12	AD3	SOFTWARE	ASP A:1575 , ALA A:1576 , LYS A:1670 , HOH A:1842	binding site for residue EDO A 1712
13	AD4	SOFTWARE	GLY A:1541 , ALA A:1542 , ASN A:1578 , HOH A:1825 , HOH A:1911 , HOH A:1922	binding site for residue EDO A 1713
14	AD5	SOFTWARE	GLU A:1567 , HOH A:1824	binding site for residue MG A 1714
15	AD6	SOFTWARE	HOH A:1809 , HOH A:1815 , HOH A:1845 , HOH A:1911 , HOH A:1920 , HOH A:1922	binding site for residue MG A 1715

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:150
                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eee......eee......eee......eee......eee......eee......eeeee....eeee........eeeee.hhh.eeeeee..eeeeee.....eeee.....hhhhh..eee....eeehhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5cvw A 1529 GSARDDVLIGDAGANVLNGLAGNDVLSGGAGDDVLLGDEGSDLLSGDAGNDDLFGGQGDDTYLFGVGYGHDTIYESGGGHDTIRINAGADQLWFARQGNDLEIRILGTDDALTVHDWYRDADHRVEIIHAANQAVDQAGIEKLVEAMAQY 1678
                                  1538      1548      1558      1568      1578      1588      1598      1608      1618      1628      1638      1648      1658      1668      1678

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (12, 12)

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