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(-) Description

Title :  E. COLI MAZF FORM III
 
Authors :  V. Zorzini, R. Loris
Date :  19 Jul 15  (Deposition) - 06 Apr 16  (Release) - 08 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.49
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Keywords :  Toxin-Antitoxin, Mrna Interferase, Ribonuclease, Persistence, Bacterial Stress Response, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Zorzini, A. Mernik, J. Lah, Y. G. Sterckx, N. De Jonge, A. Garcia-Pino, H. De Greve, W. Versees, R. Loris
Substrate Recognition And Activity Regulation Of The Escherichia Coli Mrna Endonuclease Mazf.
J. Biol. Chem. V. 291 10950 2016
PubMed-ID: 27026704  |  Reference-DOI: 10.1074/JBC.M116.715912

(-) Compounds

Molecule 1 - ENDORIBONUCLEASE MAZF
    Chains: A, B, C, D, E, F
    EC Number: 3.1.27.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: MAZF, CHPA, CHPAK, B2782, JW2753
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Synonym: TOXIN MAZF,MRNA INTERFERASE MAZF

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): AB    
Biological Unit 2 (1x):   CD  
Biological Unit 3 (1x):     EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5CO7)

(-) Sites  (0, 0)

(no "Site" information available for 5CO7)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CO7)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Gly B:27 -His B:28
2Gly E:27 -His E:28

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CO7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CO7)

(-) Exons   (0, 0)

(no "Exon" information available for 5CO7)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:104
                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeee.......eeee..hhhhhhhhheeeeeeee........eeeee....eeeee....eeee......eeeee.hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------- Transcript
                 5co7 A   2 VSRYVPDMGDLIWVDFDPHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIGHH 113
                                    11       |29        39        49        59        69        79        89        99       109    
                                            19|                                                                                     
                                             28                                                                                     


Chain B from PDB  Type:PROTEIN  Length:107
                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee......eeeee..........eeeee..hhhhhhhhh.eeeeeee........eeeeee..eeeeee.hhheeehhhhhh.eeeee.hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                 5co7 B   2 VSRYVPDMGDLIWVDFDPSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG 111
                                    11       |24        34        44        54        64        74        84        94       104       
                                            19|                                                                                        
                                             23                                                                                        


Chain C from PDB  Type:PROTEIN  Length:103
                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeee.....eeee..hhhhhhhhh.eeeeeee........eeee......eeee.hhheee.......eeeee.hhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 5co7 C   2 VSRYVPDMGDLIWVDFHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIGHHH 114
                                    11     || 31        41        51        61        71        81        91       101       111   
                                          17|                                                                                      
                                           28                                                                                      


Chain D from PDB  Type:PROTEIN  Length:103
                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeee.....eeee..hhhhhhhhheeeeeeee........eeeee....eeeee.....eeehhhhheeeeee.hhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 5co7 D   2 VSRYVPDMGDLIWVDFDHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIGHH 113
                                    11      ||30        40        50        60        70        80        90       100       110   
                                           18|                                                                                     
                                            28                                                                                     


Chain E from PDB  Type:PROTEIN  Length:110
                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeee.............eeeee..hhhhhhhhh.eeeeeee........eeeee....eeeee.hhheee.......eeeee.hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                 5co7 E   2 VSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG 111
                                    11        21        31        41        51        61        71        81        91       101       111


Chain F from PDB  Type:PROTEIN  Length:103
                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeee.....eeeee..hhhhhhhhh.eeeeeee........eee........eee.hhheee.......eeeee.hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 5co7 F   2 VSRYVPDMGDLIWVDFDPHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIGH 112
                                    11       |29        39        49        59        69        79        89        99       109   
                                            19|                                                                                    
                                             28
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CO7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CO7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CO7)

(-) Gene Ontology  (17, 17)

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  Cis Peptide Bonds
    Gly B:27 - His B:28   [ RasMol ]  
    Gly E:27 - His E:28   [ RasMol ]  
 
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  5co7
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  MAZF_ECOLI | P0AE70
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  3.1.27.-
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MAZF_ECOLI | P0AE70: 1ub4 3nfc 5ck9 5ckb 5ckd 5cke 5ckf 5ckh 5cqx 5cqy 5cr2

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5CO7)