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(-) Description

Title :  E. COLI MAZF FORM I
 
Authors :  V. Zorzini, R. Loris
Date :  15 Jul 15  (Deposition) - 06 Apr 16  (Release) - 08 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Toxin-Antitoxin, Mrna Interferase, Ribonuclease, Persistence, Bacterial Stress Response, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Zorzini, A. Mernik, J. Lah, Y. G. Sterckx, N. De Jonge, A. Garcia-Pino, H. De Greve, W. Versees, R. Loris
Substrate Recognition And Activity Regulation Of The Escherichia Coli Mrna Endonuclease Mazf.
J. Biol. Chem. V. 291 10950 2016
PubMed-ID: 27026704  |  Reference-DOI: 10.1074/JBC.M116.715912

(-) Compounds

Molecule 1 - ENDORIBONUCLEASE MAZF
    Chains: A, B
    EC Number: 3.1.27.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: MAZF, CHPA, CHPAK, B2782, JW2753
    Organism Scientific: ESCHERICHIA COLI K-12
    Organism Taxid: 83333
    Synonym: TOXIN MAZF,MRNA INTERFERASE MAZF

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric/Biological Unit (1, 3)
No.NameCountTypeFull Name
11PE3Ligand/IonPENTAETHYLENE GLYCOL

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:4 , GLY A:87 , LEU B:12 , TRP B:14 , LYS B:91binding site for residue 1PE A 201
2AC2SOFTWARETRP A:14 , GLY A:71 , LYS A:91 , VAL B:2 , ARG B:4 , GLY B:87 , THR B:89binding site for residue 1PE A 202
3AC3SOFTWARELYS A:103 , ASN A:107 , GLY A:111 , LYS B:103 , ASN B:107 , ILE B:110 , GLY B:111 , HIS B:112binding site for residue 1PE B 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CK9)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Asp B:18 -Pro B:19

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CK9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CK9)

(-) Exons   (0, 0)

(no "Exon" information available for 5CK9)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:107
                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeee.........eeeee..hhhhhhhhh.eeeeeee........eeee......eeee....eee.......eeeee.hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                 5ck9 A   1 MVSRYVPDMGDLIWVDFDPTKAGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG 111
                                    10        20||      34        44        54        64        74        84        94       104       
                                               21|                                                                                     
                                                26                                                                                     


Chain B from PDB  Type:PROTEIN  Length:104
                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeee......eeeee..hhhhhhhhh.eeeeeee........eeee......eeee....eee.......eeeee.hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------- Transcript
                 5ck9 B   2 VSRYVPDMGDLIWVDFDPGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIGH 112
                                    11       |28        38        48        58        68        78        88        98       108    
                                            19|                                                                                     
                                             27
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CK9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CK9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CK9)

(-) Gene Ontology  (17, 17)

Asymmetric/Biological Unit(hide GO term definitions)

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    Asp B:18 - Pro B:19   [ RasMol ]  
 

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  MAZF_ECOLI | P0AE70
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MAZF_ECOLI | P0AE70: 1ub4 3nfc 5ckb 5ckd 5cke 5ckf 5ckh 5co7 5cqx 5cqy 5cr2

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5CK9)