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(-) Description

Title :  ULTRAFAST DYNAMICS IN MYOGLOBIN: 0.6 PS TIME DELAY
 
Authors :  T. R. M. Barends, L. Foucar, A. Ardevol, K. J. Nass, A. Aquila, S. Botha, R K. Falahati, E. Hartmann, M. Hilpert, M. Heinz, M. C. Hoffmann, J. Koef J. Koglin, G. Kovacsova, M. Liang, D. Milathianaki, H. T. Lemke, J. Rei C. M. Roome, R. L. Shoeman, G. J. Williams, I. Burghardt, G. Hummer, S. B I. Schlichting
Date :  17 Jul 15  (Deposition) - 16 Sep 15  (Release) - 04 Nov 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Serial Femtosecond Crystallography, Time-Resolved Crystallography, Free-Electron Laser, Protein Dynamics, Carbon Monoxide, Oxygen Storage (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  T. R. Barends, L. Foucar, A. Ardevol, K. Nass, A. Aquila, S. Botha, R. B. Doak, K. Falahati, E. Hartmann, M. Hilpert, M. Heinz, M. C. Hoffmann, J. Kofinger, J. E. Koglin, G. Kovacsova, M. Liang, D. Milathianaki, H. T. Lemke, J. Reinstein, C. M. Roome, R. L. Shoeman, G. J. Williams, I. Burghardt, G. Hummer, S. Boutet, I. Schlichting
Direct Observation Of Ultrafast Collective Motions In Co Myoglobin Upon Ligand Dissociation.
Science V. 350 445 2015
PubMed-ID: 26359336  |  Reference-DOI: 10.1126/SCIENCE.AAC5492

(-) Compounds

Molecule 1 - MYOGLOBIN
    ChainsA
    Organism CommonHORSE
    Organism ScientificEQUUS CABALLUS
    Organism Taxid9796

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric/Biological Unit (3, 4)
No.NameCountTypeFull Name
1CMO1Ligand/IonCARBON MONOXIDE
2HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
3SO42Ligand/IonSULFATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:39 , LYS A:42 , PHE A:43 , LYS A:45 , HIS A:64 , VAL A:68 , LEU A:89 , SER A:92 , HIS A:93 , HIS A:97 , ILE A:99 , TYR A:103 , HIS A:113 , HIS A:116 , GLN A:128 , PHE A:138 , CMO A:204 , HOH A:313 , HOH A:315 , HOH A:335 , HOH A:359binding site for residue HEM A 201
2AC2SOFTWARESER A:58 , GLU A:59 , ASP A:60 , HOH A:371binding site for residue SO4 A 202
3AC3SOFTWARELEU A:29 , PHE A:43 , VAL A:68 , ILE A:107 , HEM A:201binding site for residue CMO A 204

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CNC)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5CNC)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CNC)

(-) Exons   (0, 0)

(no "Exon" information available for 5CNC)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:152
                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cnc A   1 GLSDGEWQQVLNVWGKVEADIAGHGQEVLIRLFTGHPETLEKFDKFKHLKTEAEMKASEDLKKHGTVVLTALGGILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISDAIIHVLHSKHPGDFGADAQGAMTKALELFRNDIAAKYKELGFQ 152
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150  

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CNC)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CNC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CNC)

(-) Gene Ontology  (11, 11)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MYG_HORSE | P680821azi 1bje 1dwr 1dws 1dwt 1gjn 1hrm 1hsy 1npf 1npg 1nz2 1nz3 1nz4 1nz5 1rse 1wla 1xch 1yma 1ymb 1ymc 2frf 2fri 2frj 2frk 2in4 2nsr 2nss 2o58 2o5b 2o5l 2o5m 2o5o 2o5q 2o5s 2o5t 2v1e 2v1f 2v1g 2v1h 2v1i 2v1j 2v1k 2vlx 2vly 2vlz 2vm0 3ba2 3hc9 3hen 3heo 3hep 3lr7 3lr9 3rj6 3rjn 3v2v 3v2z 3vau 3vm9 3wft 3wfu 3wi8 3wyo 4dc7 4dc8 4ns2 4twu 4twv 5azq 5azr 5cmv 5cn4 5cn5 5cn6 5cn7 5cn8 5cn9 5cnb 5cnd 5cne 5cnf 5cng 5d5r

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5CNC)