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(-) Description

Title :  CRYSTAL STRUCTURE OF THE ZORBAMYCIN BINDING PROTEIN (ZBMA) FROM STREPTOMYCES FLAVOVIRIDIS WITH ZORBAMYCIN
 
Authors :  C. Chang, L. Bigelow, S. Clancy, G. Babnigg, A. Joachimiak, Midwest Ce Structural Genomics (Mcsg), J. D. Rudolf, M. Ma, C. -Y. Chang, J. R. L D. Yang, B. Shen, Enzyme Discovery For Natural Product Biosynth Enzyme Discovery For Natural Product Biosynthesis (Natpro)
Date :  13 Jul 15  (Deposition) - 22 Jul 15  (Release) - 25 Nov 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Psi-Biology, Midwest Center For Structural Genomics, Mcsg, Natpro, Zorbamycin Binding Protein, Enzyme Discovery For Natural Product Biosynthesis, Zorbamycin, Antibiotic Binding Protein-Antibiotic Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. D. Rudolf, L. Bigelow, C. Chang, M. E. Cuff, J. R. Lohman, C. Y. Chang, M. Ma, D. Yang, S. Clancy, G. Babnigg, A. Joachimiak, G. N. Phillips, B. Shen
Crystal Structure Of The Zorbamycin-Binding Protein Zbma, The Primary Self-Resistance Element In Streptomyces Flavoviridis Atcc21892.
Biochemistry V. 54 6842 2015
PubMed-ID: 26512730  |  Reference-DOI: 10.1021/ACS.BIOCHEM.5B01008

(-) Compounds

Molecule 1 - ZBM BINDING PROTEIN
    ChainsA, B
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPMCSG57
    Expression System Taxid562
    GeneZBMA
    Organism ScientificSTREPTOMYCES FLAVOVIRIDIS
    Organism Taxid66889

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric/Biological Unit (3, 6)
No.NameCountTypeFull Name
152G2Ligand/IonZORBAMYCIN
2CL2Ligand/IonCHLORIDE ION
3CU2Ligand/IonCOPPER (II) ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:35 , GLU A:36 , ASP A:37 , PRO A:59 , ASP A:60 , ASN A:61 , THR A:62 , GLN A:63 , TRP A:65 , ARG A:67 , TYR A:86 , ALA A:89 , THR A:95 , ARG A:98 , TRP A:102 , ARG A:109 , GLY A:113 , LEU A:115 , HIS A:117 , CU A:202 , CL A:203 , HOH A:301 , HOH A:303 , HOH A:309 , HOH A:313 , HOH A:321 , HOH A:325 , HOH A:332 , HOH A:338 , HOH A:357 , HOH A:364 , HOH A:365 , PHE B:33 , THR B:35 , PHE B:38 , GLU B:47 , PHE B:49 , CYS B:51 , SER B:52 , VAL B:53 , 52G B:201 , HOH B:309binding site for residue 52G A 201
2AC2SOFTWARE52G A:201 , CL A:203binding site for residue CU A 202
3AC3SOFTWAREGLN A:63 , LEU A:115 , 52G A:201 , CU A:202binding site for residue CL A 203
4AC4SOFTWAREPHE A:33 , PHE A:38 , GLU A:47 , PHE A:49 , CYS A:51 , SER A:52 , VAL A:53 , 52G A:201 , HOH A:301 , HOH A:321 , ASP B:37 , PRO B:59 , ASP B:60 , ASN B:61 , THR B:62 , GLN B:63 , TRP B:65 , ARG B:67 , TYR B:86 , ALA B:89 , THR B:95 , ARG B:98 , TRP B:102 , ARG B:109 , GLY B:113 , LEU B:115 , HIS B:117 , ALA B:125 , CU B:202 , CL B:203 , HOH B:303 , HOH B:307 , HOH B:318 , HOH B:319 , HOH B:322 , HOH B:325 , HOH B:329 , HOH B:339 , HOH B:346binding site for residue 52G B 201
5AC5SOFTWARE52G B:201 , CL B:203binding site for residue CU B 202
6AC6SOFTWAREGLN B:63 , LEU B:115 , 52G B:201 , CU B:202binding site for residue CL B 203

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CJ3)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5CJ3)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CJ3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CJ3)

(-) Exons   (0, 0)

(no "Exon" information available for 5CJ3)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:126
                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeeeeeeeeee.hhhhhhhhhhhh...eeeeee..eeeeee..eeeeeee.....hhhh.eeeeeeehhhhhhhhhh.............ee...eee..eeeeeee.....eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5cj3 A  -2 SNAMAVLLSGVPVLAALDVSTTQKFWIEVLGFTEEFLTEDFGGVSRDGVELFICSVEDQVVPDNTQAWLRVRDIDALHAEWSARVSSDYADASHPAMTAIREVPWGREFGLRDPAGNLVHFSELSE 123
                                     7        17        27        37        47        57        67        77        87        97       107       117      

Chain B from PDB  Type:PROTEIN  Length:126
                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeeeeee.hhhhhhhhhhhh...eeeeee..eeeeee..eeeeeee.....hhhh.eeeeeeehhhhhhhhhhh............ee...eee..eeeeeee.....eeeeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5cj3 B   1 MAVLLSGVPVLAALDVSTTQKFWIEVLGFTEEFLTEDFGGVSRDGVELFICSVEDQVVPDNTQAWLRVRDIDALHAEWSARVSSDYADASHPAMTAIREVPWGREFGLRDPAGNLVHFSELSEAAE 126
                                    10        20        30        40        50        60        70        80        90       100       110       120      

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CJ3)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CJ3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CJ3)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        B9UIZ4_9ACTN | B9UIZ44iag

(-) Related Entries Specified in the PDB File

4iag THIS PROTEIN IS SAME PROTEIN TO 4IAG WITH LIGAND BOUND FORM RELATED ID: MCSG-APC109219 RELATED DB: TARGETTRACK