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(-) Description

Title :  CRYSTAL STRUCTURE OF ZBMA, THE ZORBAMYCIN BINDING PROTEIN FROM STREPTOMYCES FLAVOVIRIDIS
 
Authors :  M. E. Cuff, L. Bigelow, C. J. P. Bruno, S. Clancy, G. Babnigg, C. A. Bingma R. Yennamalli, J. Lohman, M. Ma, B. Shen, G. N. Phillips Jr. , A. Joachi Midwest Center For Structural Genomics (Mcsg), Enzyme Discov Natural Product Biosynthesis (Natpro)
Date :  06 Dec 12  (Deposition) - 20 Feb 13  (Release) - 02 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Structural Genomics, Psi-Biology, Midwest Center For Structural Genomics, Mcsg, Enzyme Discovery For Natural Product Biosynthesis, Natpro, Blma_like, Zorbamycin, Reductive Isopropylation, Zorbamycin Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. D. Rudolf, L. Bigelow, C. Chang, M. E. Cuff, J. R. Lohman, C. Y. Chang, M. Ma, D. Yang, S. Clancy, G. Babnigg, A. Joachimiak, G. N. Phillips, B. Shen
Crystal Structure Of The Zorbamycin-Binding Protein Zbma, The Primary Self-Resistance Element In Streptomyces Flavoviridis Atcc21892.
Biochemistry V. 54 6842 2015
PubMed-ID: 26512730  |  Reference-DOI: 10.1021/ACS.BIOCHEM.5B01008

(-) Compounds

Molecule 1 - ZBM BINDING PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG57
    Expression System Strain: BL21(DE3)MAGIC
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: ZBMA
    Organism Scientific: STREPTOMYCES FLAVOVIRIDIS
    Organism Taxid: 66889
    Strain: ATCC 21892

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 11)

Asymmetric Unit (4, 11)
No.NameCountTypeFull Name
1EDO8Ligand/Ion1,2-ETHANEDIOL
2GOL1Ligand/IonGLYCEROL
3ILY1Mod. Amino AcidN~6~-PROPAN-2-YL-L-LYSINE
4MSE1Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (4, 22)
No.NameCountTypeFull Name
1EDO16Ligand/Ion1,2-ETHANEDIOL
2GOL2Ligand/IonGLYCEROL
3ILY2Mod. Amino AcidN~6~-PROPAN-2-YL-L-LYSINE
4MSE2Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:9 , VAL A:10 , GLN A:63 , ALA A:64BINDING SITE FOR RESIDUE EDO A 201
2AC2SOFTWARETRP A:65 , ARG A:67 , TRP A:102BINDING SITE FOR RESIDUE EDO A 202
3AC3SOFTWAREPRO A:59 , ASP A:60 , THR A:62 , GLY A:113 , LEU A:115BINDING SITE FOR RESIDUE GOL A 203
4AC4SOFTWAREALA A:76 , GLU A:77 , ARG A:81 , HOH A:325BINDING SITE FOR RESIDUE EDO A 204
5AC5SOFTWAREASP A:72 , HIS A:75 , ALA A:76 , SER A:79 , HOH A:346BINDING SITE FOR RESIDUE EDO A 205
6AC6SOFTWAREALA A:80 , ARG A:81 , VAL A:82 , SER A:83BINDING SITE FOR RESIDUE EDO A 206
7AC7SOFTWAREGLU A:105 , GLY A:107 , HIS A:117BINDING SITE FOR RESIDUE EDO A 207
8AC8SOFTWAREALA A:89 , HIS A:91 , PRO A:92 , ARG A:109 , ASP A:110 , GLY A:113BINDING SITE FOR RESIDUE EDO A 208
9AC9SOFTWARETHR A:95 , ALA A:96 , ARG A:98BINDING SITE FOR RESIDUE EDO A 209

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4IAG)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4IAG)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 4IAG)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:121
                                                                                                                                                         
               SCOP domains d4iaga_ A: automated matches                                                                                              SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeee.hhhhhhhhhhhh...eeeeee..eeeeee..eeeeeee.....hhhh.eeeee..hhhhhhhhhhh............ee...ee...eeeeeee.....eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------- Transcript
                 4iag A   2 AVLLSGVPVLAALDVSTTQkFWIEVLGFTEEFLTEDFGGVSRDGVELFICSVEDQVVPDNTQAWLRVRDIDALHAEWSARVSSDYADASHPAmTAIREVPWGREFGLRDPAGNLVHFSELS 122
                                    11        21        31        41        51        61        71        81        91  |    101       111       121 
                                              21-ILY                                                                   94-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4IAG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4IAG)

(-) Gene Ontology  (2, 2)

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