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(-) Description

Title :  STRUCTURAL BASIS OF H2A.Z RECOGNITION BY YL1 HISTONE CHAPERONE COMPONENT OF SRCAP/SWR1 CHROMATIN REMODELING COMPLEX
 
Authors :  S. Shan, X. Liang, L. Pan, C. Wu, Z. Zhou
Date :  10 Jul 15  (Deposition) - 09 Mar 16  (Release) - 27 Apr 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.89
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Remodeling Complex, Histone, Chaperone (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. Liang, S. Shan, L. Pan, J. Zhao, A. Ranjan, F. Wang, Z. Zhang, Y. Huang H. Feng, D. Wei, L. Huang, X. Liu, Q. Zhong, J. Lou, G. Li, C. Wu, Z. Zhou
Structural Basis Of H2A. Z Recognition By Srcap Chromatin-Remodeling Subunit Yl1
Nat. Struct. Mol. Biol. V. 23 317 2016
PubMed-ID: 26974124  |  Reference-DOI: 10.1038/NSMB.3190

(-) Compounds

Molecule 1 - VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 72 HOMOLOG
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Cell Line: BL21(RIPL)
    Expression System Taxid: 562
    Gene: YL-1, CG4621
    Organism Common: FRUIT FLY
    Organism Scientific: DROSOPHILA MELANOGASTER
    Organism Taxid: 7227
    Synonym: PROTEIN YL-1
 
Molecule 2 - HISTONE H2A.Z
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Cell Line: BL21(RIPL)
    Expression System Taxid: 562
    Gene: H2AFZ, H2AZ
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: H2A/Z

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5CHL)

(-) Sites  (0, 0)

(no "Site" information available for 5CHL)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CHL)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:68
                                                                                                    
               SCOP domains -------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhhhhhhhhhhhhhhhhh................................... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                 5chl A   4 AASRSRRNNAGNKIAHLLNEEEEDDFYKTSYGGFQEDEEDKEYEQKDEEEDVVDSDFSIDENDEPVSD  71
                                    13        23        33        43        53        63        


Chain B from PDB  Type:PROTEIN  Length:176
                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh...eehhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh........eehhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5chl B   4 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSKQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIA 179
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CHL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CHL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CHL)

(-) Gene Ontology  (26, 28)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        H2AZ_HUMAN | P0C0S5: 1f66 3wa9 4cay 4nft 5b31 5b32 5b33 5fug

(-) Related Entries Specified in the PDB File

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