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(-) Description

Title :  CRYSTAL STRUCTURE OF PROLIFERATING CELL NUCLEAR ANTIGEN FROM LEISHMANIA DONOVANI AT 3.2 A RESOLUTION
 
Authors :  P. K. Shukla, S. P. Yadav, P. Sharma, P. Kaur, S. Sharma, T. P. Singh
Date :  08 Jul 15  (Deposition) - 07 Oct 15  (Release) - 07 Oct 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.20
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,D,E  (1x)
Biol. Unit 2:  B,C,F  (1x)
Keywords :  Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. K. Shukla, S. P. Yadav, P. Sharma, P. Kaur, S. Sharma, T. P. Singh
Crystal Structure Of Proliferating Cell Nuclear Antigen Fro Leishmania Donovani At 3. 2 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PROLIFERATING CELL NUCLEAR ANTIGEN,PROLIFERATING CELL NUCLEAR ANTIGEN
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: PCNA
    Organism Scientific: LEISHMANIA DONOVANI
    Organism Taxid: 5661

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): A  DE 
Biological Unit 2 (1x):  BC  F

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5CFK)

(-) Sites  (0, 0)

(no "Site" information available for 5CFK)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CFK)

(-) Cis Peptide Bonds  (16, 16)

Asymmetric Unit
No.Residues
1Glu A:130 -Met A:131
2Gly A:186 -Val A:187
3Ser A:188 -Asp A:189
4Leu B:119 -Glu B:120
5Met B:131 -Asp B:132
6Gly B:186 -Val B:187
7Ser B:188 -Asp B:189
8Met C:131 -Asp C:132
9Ser D:188 -Asp D:189
10Leu E:119 -Glu E:120
11Glu E:130 -Met E:131
12Gly E:186 -Val E:187
13Ser E:188 -Asp E:189
14Leu F:119 -Glu F:120
15Glu F:130 -Met F:131
16Gly F:186 -Val F:187

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CFK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CFK)

(-) Exons   (0, 0)

(no "Exon" information available for 5CFK)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:253
                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhhhh...eeeeeee..eeeeeee.....eeeeeeee.hhh.eee....eeeeeehhhhhhhhhhh....eeeeee.....eeeeeee.....eeeeeeee.................eeeeeehhhhhhhhhhhh....eeeeee...eeeee........eeeee................eeeeeehhhhhhhhhhhhh..eeeeeee..eeeeeeeee...eeeeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cfk A   1 MLEAQVQFASLWKRLVECINGLVNEANFDCNPGGLSVQAMDSSHVALVHMLLRDDCFVKYQCGRNSILGLNLASLSKVLKIVDSNDSLSLRHDDDSDVVTLTSENPEKTRKCEYQLKLLEIEAESMGIPEMDYRSTVTLNSAEFAKIVRDMQVFGDTVTIAISKEGVKFSSSGDVGQGYTFLQAAGVSDRGVEVTMEEPITLSFALRFMGIFAKGSTLSERVTLKFAKDSPCMVEYGIDNVGYLRYYLAPKVD 256
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190|      203       213       223       233       243       253   
                                                                                                                                                                                                                       190|                                                              
                                                                                                                                                                                                                        194                                                              


Chain B from PDB  Type:PROTEIN  Length:253
                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhhhh...eeeeeee..eeeeeee.....eeeeeeee.hhh.eee....eeeeeehhhhhhhhh......eeeeee.....eeeeeee.....eeeeeeee.................eeeeeehhhhhhhhhhhh....eeeeeee..eeeeeee....eeeeee..........eee....eeeeeehhhhhhhhhhhhh..eeeeeee..eeeeeeeee...eeeeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cfk B   1 MLEAQVQFASLWKRLVECINGLVNEANFDCNPGGLSVQAMDSSHVALVHMLLRDDCFVKYQCGRNSILGLNLASLSKVLKIVDSNDSLSLRHDDDSDVVTLTSENPEKTRKCEYQLKLLEIEAESMGIPEMDYRSTVTLNSAEFAKIVRDMQVFGDTVTIAISKEGVKFSSSGDVGQGYTFLQAAGVSDRGVEVTMEEPITLSFALRFMGIFAKGSTLSERVTLKFAKDSPCMVEYGIDNVGYLRYYLAPKVD 256
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190|      203       213       223       233       243       253   
                                                                                                                                                                                                                       190|                                                              
                                                                                                                                                                                                                        194                                                              


Chain C from PDB  Type:PROTEIN  Length:253
                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhhhh...eeeeeee..eeeeeee.....eeeeeeee.hhh.eeee...eeeeeehhhhhhhhhh.....eeeeee.....eeeeeee.....eeeeeeee..................eeeeehhhhhhhhhhhh....eeeeee....eeeeee....eeeeee.................eeeeeehhhhhhhhhhhhh..eeeee......eeeeee....eeeeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cfk C   1 MLEAQVQFASLWKRLVECINGLVNEANFDCNPGGLSVQAMDSSHVALVHMLLRDDCFVKYQCGRNSILGLNLASLSKVLKIVDSNDSLSLRHDDDSDVVTLTSENPEKTRKCEYQLKLLEIEAESMGIPEMDYRSTVTLNSAEFAKIVRDMQVFGDTVTIAISKEGVKFSSSGDVGQGYTFLQAAGVSDRGVEVTMEEPITLSFALRFMGIFAKGSTLSERVTLKFAKDSPCMVEYGIDNVGYLRYYLAPKVD 256
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190|      203       213       223       233       243       253   
                                                                                                                                                                                                                       190|                                                              
                                                                                                                                                                                                                        194                                                              


Chain D from PDB  Type:PROTEIN  Length:253
                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhhhh...eeeeeee..eeeeeee.....eeeeeeee.hhh.eee.....eeeeehhhhhhhhhhh....eeeeee.....eeeeeee.....eeeeeeee.................eeeeeehhhhhhhhhhhh....eeeeee...eeeeeee....eeeeeee.........ee.....eeeeeehhhhhhhhhhhhh..eeeeee.....eeeeee....eeeeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cfk D   1 MLEAQVQFASLWKRLVECINGLVNEANFDCNPGGLSVQAMDSSHVALVHMLLRDDCFVKYQCGRNSILGLNLASLSKVLKIVDSNDSLSLRHDDDSDVVTLTSENPEKTRKCEYQLKLLEIEAESMGIPEMDYRSTVTLNSAEFAKIVRDMQVFGDTVTIAISKEGVKFSSSGDVGQGYTFLQAAGVSDRGVEVTMEEPITLSFALRFMGIFAKGSTLSERVTLKFAKDSPCMVEYGIDNVGYLRYYLAPKVD 256
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190|      203       213       223       233       243       253   
                                                                                                                                                                                                                       190|                                                              
                                                                                                                                                                                                                        194                                                              


Chain E from PDB  Type:PROTEIN  Length:253
                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee..hhhhhhhhhhhhh...eeeeee...eeeeeee.....eeeeeeee.hhh.........eeeeehhhhhhhhhh.....eeeee......eeeeeee.....eeeeeeee.................eeeeeehhhhhhhhhhhh....eeeeeee..eeeeeee...eeeeeeee................eeeeeehhhhhhhhhhhhh..eeeeeee..eeeeeeeee...eeeeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cfk E   1 MLEAQVQFASLWKRLVECINGLVNEANFDCNPGGLSVQAMDSSHVALVHMLLRDDCFVKYQCGRNSILGLNLASLSKVLKIVDSNDSLSLRHDDDSDVVTLTSENPEKTRKCEYQLKLLEIEAESMGIPEMDYRSTVTLNSAEFAKIVRDMQVFGDTVTIAISKEGVKFSSSGDVGQGYTFLQAAGVSDRGVEVTMEEPITLSFALRFMGIFAKGSTLSERVTLKFAKDSPCMVEYGIDNVGYLRYYLAPKVD 256
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190|      203       213       223       233       243       253   
                                                                                                                                                                                                                       190|                                                              
                                                                                                                                                                                                                        194                                                              


Chain F from PDB  Type:PROTEIN  Length:253
                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee...hhhhhhhhhhhhh...eeeeee...eeeeeee.....eeeeeeee.hhh.ee.....eeeeeehhhhhhhhhh.....eeeeee.....ee..eee.....eeee..ee.................eeeeeehhhhhhhhhhhh....eeeeeee..eeeeeeee..eeeeeee..........eeee...eeeeeehhhhhhhhhhhhh..eeeeee.....eeeeee....eeeeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cfk F   1 MLEAQVQFASLWKRLVECINGLVNEANFDCNPGGLSVQAMDSSHVALVHMLLRDDCFVKYQCGRNSILGLNLASLSKVLKIVDSNDSLSLRHDDDSDVVTLTSENPEKTRKCEYQLKLLEIEAESMGIPEMDYRSTVTLNSAEFAKIVRDMQVFGDTVTIAISKEGVKFSSSGDVGQGYTFLQAAGVSDRGVEVTMEEPITLSFALRFMGIFAKGSTLSERVTLKFAKDSPCMVEYGIDNVGYLRYYLAPKVD 256
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190|      203       213       223       233       243       253   
                                                                                                                                                                                                                       190|                                                              
                                                                                                                                                                                                                        194
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CFK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CFK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CFK)

(-) Gene Ontology  (5, 5)

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  Cis Peptide Bonds
    Glu A:130 - Met A:131   [ RasMol ]  
    Glu E:130 - Met E:131   [ RasMol ]  
    Glu F:130 - Met F:131   [ RasMol ]  
    Gly A:186 - Val A:187   [ RasMol ]  
    Gly B:186 - Val B:187   [ RasMol ]  
    Gly E:186 - Val E:187   [ RasMol ]  
    Gly F:186 - Val F:187   [ RasMol ]  
    Leu B:119 - Glu B:120   [ RasMol ]  
    Leu E:119 - Glu E:120   [ RasMol ]  
    Leu F:119 - Glu F:120   [ RasMol ]  
    Met B:131 - Asp B:132   [ RasMol ]  
    Met C:131 - Asp C:132   [ RasMol ]  
    Ser A:188 - Asp A:189   [ RasMol ]  
    Ser B:188 - Asp B:189   [ RasMol ]  
    Ser D:188 - Asp D:189   [ RasMol ]  
    Ser E:188 - Asp E:189   [ RasMol ]  
 
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        B5TV91_LEIDO | B5TV91: 5b7o 5h0t 5hac

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4hk1