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(-) Description

Title :  CRYSTAL STRUCTURE OF PROLIFERATING CELL NUCLEAR ANTIGEN FROM LEISHMANIA DONOVANI AT 2.95 A RESOLUTION
 
Authors :  P. K. Singh, S. P. Yadav, P. Sharma, P. Kaur, S. Sharma, T. P. Singh
Date :  30 Dec 15  (Deposition) - 23 Mar 16  (Release) - 23 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.95
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. K. Singh, S. P. Yadav, P. Sharma, P. Kaur, S. Sharma, T. P. Singh
Crystal Structure Of Proliferating Cell Nuclear Antigen Fro Leishmania Donovani At 2. 95 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PROLIFERATING CELL NUCLEAR ANTIGEN
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: DH5A
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: PCNA
    Organism Scientific: LEISHMANIA DONOVANI
    Organism Taxid: 5661

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5HAC)

(-) Sites  (0, 0)

(no "Site" information available for 5HAC)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5HAC)

(-) Cis Peptide Bonds  (32, 32)

Asymmetric/Biological Unit
No.Residues
1Pro A:-4 -Arg A:-3
2Arg A:-3 -Gly A:-2
3Gly A:-2 -Ser A:-1
4Ser A:-1 -His A:0
5Leu A:119 -Glu A:120
6Met A:126 -Gly A:127
7Leu B:119 -Glu B:120
8Met B:126 -Gly B:127
9Gly B:186 -Val B:187
10Ser B:188 -Asp B:189
11Arg C:-3 -Gly C:-2
12Ser C:-1 -His C:0
13Met C:131 -Asp C:132
14His D:0 -Met D:1
15Ala D:185 -Gly D:186
16Ser D:188 -Asp D:189
17Gly E:-2 -Ser E:-1
18Ser E:-1 -His E:0
19Leu E:119 -Glu E:120
20Gly E:186 -Val E:187
21Ser E:188 -Asp E:189
22Asp E:275 -Asn E:276
23Arg F:-3 -Gly F:-2
24Gly F:-2 -Ser F:-1
25Ser F:-1 -His F:0
26Ala F:123 -Glu F:124
27Glu F:124 -Ser F:125
28Met F:126 -Gly F:127
29Ala F:184 -Ala F:185
30Ala F:185 -Gly F:186
31Gly F:186 -Val F:187
32Ser F:188 -Asp F:189

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HAC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HAC)

(-) Exons   (0, 0)

(no "Exon" information available for 5HAC)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:260
                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eee..hhhhhhhhhhhhh...eeeeeee..eeeeeee.....eeeeeeee.hhh.ee.....eeeeeehhhhhhhhhh.....eeeee......eeeeeee.....eeeeeeee..................eeeeehhhhhhhhhhhh....eeeeee....eeeeee....eeeeee..........eee....eeeeeehhhhhhhhhhhhh..eeeeeee..eeeeeeeee...eeeeeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hac A  -6 LVPRGSHMLEAQVQFASLWKRLVECINGLVNEANFDCNPGGLSVQAMDSSHVALVHMLLRDDCFVKYQCGRNSILGLNLASLSKVLKIVDSNDSLSLRHDDDSDVVTLTSENPEKTRKCEYQLKLLEIEAESMGIPEMDYRSTVTLNSAEFAKIVRDMQVFGDTVTIAISKEGVKFSSSGDVGQGYTFLQAAGVSDRGVEVTMEEPITLSFALRFMGIFAKGSTLSERVTLKFAKDSPCMVEYGIDNVGYLRYYLAPKVD 289
                                     3        13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183      |229       239       249       259       269       279       289
                                                                                                                                                                                                                              190|                                                              
                                                                                                                                                                                                                               227                                                              


Chain B from PDB  Type:PROTEIN  Length:261
                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eee..hhhhhhhhhhhhh...eeeeee...eeeeeee.....eeeeeeee.hhh........eeeeeehhhhhhhhhh.....eeeee......eeeeeee.....eeeeeeee.................eeeeeehhhhhhhhhhhh....eeeeee...eeeeeee....eeeeeee.........eee....eeeeeehhhhhhhhhhhhh..eeeeeee..eeeeeeeee...eeeeeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hac B  -7 GLVPRGSHMLEAQVQFASLWKRLVECINGLVNEANFDCNPGGLSVQAMDSSHVALVHMLLRDDCFVKYQCGRNSILGLNLASLSKVLKIVDSNDSLSLRHDDDSDVVTLTSENPEKTRKCEYQLKLLEIEAESMGIPEMDYRSTVTLNSAEFAKIVRDMQVFGDTVTIAISKEGVKFSSSGDVGQGYTFLQAAGVSDRGVEVTMEEPITLSFALRFMGIFAKGSTLSERVTLKFAKDSPCMVEYGIDNVGYLRYYLAPKVD 289
                                     2        12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       228       238       248       258       268       278       288 
                                                                                                                                                                                                                               190|                                                              
                                                                                                                                                                                                                                227                                                              


Chain C from PDB  Type:PROTEIN  Length:260
                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeee..hhhhhhhhhhhhh...eeeeeee..eeeeeee.....eeeeeeee.hhh.eee....eeeeeehhhhhhhhhh.....eeeeee.....eeeeeee.....eeeeeeee.................eeeeeehhhhhhhhhhhh....eeeeeee..eeeeeee....eeeeeee.........eee....eeeeeehhhhhhhhhhhhh..eeeeeee..eeeeeeeee...eeeeeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hac C  -6 LVPRGSHMLEAQVQFASLWKRLVECINGLVNEANFDCNPGGLSVQAMDSSHVALVHMLLRDDCFVKYQCGRNSILGLNLASLSKVLKIVDSNDSLSLRHDDDSDVVTLTSENPEKTRKCEYQLKLLEIEAESMGIPEMDYRSTVTLNSAEFAKIVRDMQVFGDTVTIAISKEGVKFSSSGDVGQGYTFLQAAGVSDRGVEVTMEEPITLSFALRFMGIFAKGSTLSERVTLKFAKDSPCMVEYGIDNVGYLRYYLAPKVD 289
                                     3        13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183      |229       239       249       259       269       279       289
                                                                                                                                                                                                                              190|                                                              
                                                                                                                                                                                                                               227                                                              


Chain D from PDB  Type:PROTEIN  Length:261
                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeee..hhhhhhhhhhhhh...eeeeee...eeeeeee.....eeeeeeee.hhh.eee....eeeeeehhhhhhhhhh.....eeeeee.....eeeeeee.....eeeeeeee..................eeeeehhhhhhhhhhhh....eeeeeee..eeeeeee....eeeeeee.........eee....eeeeeehhhhhhhhhhhhh..eeeeeee..eeeeeeeee...eeeeeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hac D  -7 GLVPRGSHMLEAQVQFASLWKRLVECINGLVNEANFDCNPGGLSVQAMDSSHVALVHMLLRDDCFVKYQCGRNSILGLNLASLSKVLKIVDSNDSLSLRHDDDSDVVTLTSENPEKTRKCEYQLKLLEIEAESMGIPEMDYRSTVTLNSAEFAKIVRDMQVFGDTVTIAISKEGVKFSSSGDVGQGYTFLQAAGVSDRGVEVTMEEPITLSFALRFMGIFAKGSTLSERVTLKFAKDSPCMVEYGIDNVGYLRYYLAPKVD 289
                                     2        12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       228       238       248       258       268       278       288 
                                                                                                                                                                                                                               190|                                                              
                                                                                                                                                                                                                                227                                                              


Chain E from PDB  Type:PROTEIN  Length:259
                                                                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeee..hhhhhhhhhhhhh...eeeeee...eeeeeee.....eeeeeeee.hhh.eee....eeeeeehhhhhhhhhh.....eeeeee.....eeeeeee.....eeeeeeee.................eeeeeehhhhhhhhhhhh....eeeeeee..eeeeeee....eeeeeee.........eee....eeeeeehhhhhhhhhhhhh..eeeeeee..eeeeeeee....eeeeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hac E  -5 VPRGSHMLEAQVQFASLWKRLVECINGLVNEANFDCNPGGLSVQAMDSSHVALVHMLLRDDCFVKYQCGRNSILGLNLASLSKVLKIVDSNDSLSLRHDDDSDVVTLTSENPEKTRKCEYQLKLLEIEAESMGIPEMDYRSTVTLNSAEFAKIVRDMQVFGDTVTIAISKEGVKFSSSGDVGQGYTFLQAAGVSDRGVEVTMEEPITLSFALRFMGIFAKGSTLSERVTLKFAKDSPCMVEYGIDNVGYLRYYLAPKVD 289
                                     4        14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184     ||230       240       250       260       270       280         
                                                                                                                                                                                                                             190|                                                              
                                                                                                                                                                                                                              227                                                              


Chain F from PDB  Type:PROTEIN  Length:261
                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeee..hhhhhhhhhhhhh...eeeeee...eeeeeee.....eeeeeeee.hhh.eeee......eeehhhhhhhhhh.....eeeeee.....eeeeeee.....eeeeeeee.................eeeeeehhhhhhhhhhhh....eeeeeee..eeeeeee....eeeeeee.........eee....eeeeeehhhhhhhhhhhhh..eeeeeee..eeeeeeeee...eeeeeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hac F  -7 GLVPRGSHMLEAQVQFASLWKRLVECINGLVNEANFDCNPGGLSVQAMDSSHVALVHMLLRDDCFVKYQCGRNSILGLNLASLSKVLKIVDSNDSLSLRHDDDSDVVTLTSENPEKTRKCEYQLKLLEIEAESMGIPEMDYRSTVTLNSAEFAKIVRDMQVFGDTVTIAISKEGVKFSSSGDVGQGYTFLQAAGVSDRGVEVTMEEPITLSFALRFMGIFAKGSTLSERVTLKFAKDSPCMVEYGIDNVGYLRYYLAPKVD 289
                                     2        12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       228       238       248       258       268       278       288 
                                                                                                                                                                                                                               190|                                                              
                                                                                                                                                                                                                                227
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HAC)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HAC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HAC)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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Asymmetric/Biological Unit
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  Ligands, Modified Residues, Ions
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  Sites
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  Cis Peptide Bonds
    Ala D:185 - Gly D:186   [ RasMol ]  
    Ala F:123 - Glu F:124   [ RasMol ]  
    Ala F:184 - Ala F:185   [ RasMol ]  
    Ala F:185 - Gly F:186   [ RasMol ]  
    Arg A:-3 - Gly A:-2   [ RasMol ]  
    Arg C:-3 - Gly C:-2   [ RasMol ]  
    Arg F:-3 - Gly F:-2   [ RasMol ]  
    Asp E:275 - Asn E:276   [ RasMol ]  
    Glu F:124 - Ser F:125   [ RasMol ]  
    Gly A:-2 - Ser A:-1   [ RasMol ]  
    Gly B:186 - Val B:187   [ RasMol ]  
    Gly E:-2 - Ser E:-1   [ RasMol ]  
    Gly E:186 - Val E:187   [ RasMol ]  
    Gly F:-2 - Ser F:-1   [ RasMol ]  
    Gly F:186 - Val F:187   [ RasMol ]  
    His D:0 - Met D:1   [ RasMol ]  
    Leu A:119 - Glu A:120   [ RasMol ]  
    Leu B:119 - Glu B:120   [ RasMol ]  
    Leu E:119 - Glu E:120   [ RasMol ]  
    Met A:126 - Gly A:127   [ RasMol ]  
    Met B:126 - Gly B:127   [ RasMol ]  
    Met C:131 - Asp C:132   [ RasMol ]  
    Met F:126 - Gly F:127   [ RasMol ]  
    Pro A:-4 - Arg A:-3   [ RasMol ]  
    Ser A:-1 - His A:0   [ RasMol ]  
    Ser B:188 - Asp B:189   [ RasMol ]  
    Ser C:-1 - His C:0   [ RasMol ]  
    Ser D:188 - Asp D:189   [ RasMol ]  
    Ser E:-1 - His E:0   [ RasMol ]  
    Ser E:188 - Asp E:189   [ RasMol ]  
    Ser F:-1 - His F:0   [ RasMol ]  
    Ser F:188 - Asp F:189   [ RasMol ]  
 

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        B5TV91_LEIDO | B5TV91: 5b7o 5cfk 5h0t

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