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(-) Description

Title :  CRYSTAL STRUCTURE OF A T1-LIKE THIOLASE FROM MYCOBACTERIUM SMEGMATIS
 
Authors :  N. Janardan, M. R. N. Murthy
Date :  01 Jul 15  (Deposition) - 18 May 16  (Release) - 18 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.45
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F  (2x)
Keywords :  Thiolase, Mycobacterium Smegmatis, Coenzyme A, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Janardan, R. K. Harijan, T. R. Kiema, R. K. Wierenga, M. R. Murthy
Structural Characterization Of A Mitochondrial 3-Ketoacyl-Coa (T1)-Like Thiolase From Mycobacterium Smegmatis
Acta Crystallogr. , Sect. D V. 71 2479 2015
PubMed-ID: 26627655  |  Reference-DOI: 10.1107/S1399004715019331

(-) Compounds

Molecule 1 - BETA-KETOTHIOLASE
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: MSMEG_2207
    Organism Scientific: MYCOBACTERIUM SMEGMATIS STR. MC2 155
    Organism Taxid: 246196
    Strain: MC2 155

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): ABCD  
Biological Unit 2 (2x):     EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5CBQ)

(-) Sites  (0, 0)

(no "Site" information available for 5CBQ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CBQ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5CBQ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CBQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CBQ)

(-) Exons   (0, 0)

(no "Exon" information available for 5CBQ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:399
                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee...ee........hhhhhhhhhhhhhhhhhh.hhhhh..eeee.........hhhhhhhhhh.......eeeeehhhhhhhhhhhhhhhhhhh....eeeeeeeee.hhh.eee..............eehhhhhhhhh.........hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.hhhhhh..eeee...eeee..........hhhhhh......................eeeeeeeeeehhhhhhhhh..eeeeeeeeeeee.hhhhhhhhhhhhhhhhhhhhh.hhhhh.eeee...hhhhhhhhhhhh..hhhhhhhh....hhhhhh.hhhhhhhhhhhhhhhhhhhhh..eeeeeeee...eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cbq A   4 RDAVICEPVRTPIGRYGGMFRSLTAVDLGVTALKGLLERTGIAADQVEDVILGHCYPNSEAPAIGRVVALDAGLPITVPGMQVDRRCGSGLQAVIQACLQVRSGDHDLVVAGGAESMSNVAFYSTDMRWGGARTGVQIHDGLARGRTTAGGKFHPVPGGMLETAENLRREYHISRTEQDELAVRSHQRAVAAQSEGVLAEEIIPVPVRTDGEETISVDEHPRADTTVEALAKLKPVLKQDPEATVTAGNSSGQNDAASMCIVTTPEKAAELGLKPLVRLVSWGSAGVAPDLMGIGPVPATEVALAKAGLTLADIDLIELNEAFAAQALAVMREWKFGEADHERTNVRGSGISLGHPVGATGGRMLATLARELHRREARYGLETMCIGGGQGLAAVFERV 404
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       214       224       234     ||245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395         
                                                                                                                                                                                                                                          212|                       240|                                                                                                                                                                  
                                                                                                                                                                                                                                           214                        242                                                                                                                                                                  


Chain B from PDB  Type:PROTEIN  Length:398
                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee...ee........hhhhhhhhhhhhhhhhhh.hhhhh..eeee.........hhhhhhhhhh.......eeeeehhhhhhhhhhhhhhhhhhh....eeeeeeeee.hhh.eee..............eehhhhhhhhh.........hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.hhhhhh..eee..eee..........hhhhhhh......................eeeeeeeeeehhhhhhhh...eeeeeeeeeeee.hhhhhhhhhhhhhhhhhhhh..hhhhh.eeee...hhhhhhhhhhhh....hhhhhh....hhhhhh.hhhhhhhhhhhhhhhhhhhhh..eeeeeeee...eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cbq B   4 RDAVICEPVRTPIGRYGGMFRSLTAVDLGVTALKGLLERTGIAADQVEDVILGHCYPNSEAPAIGRVVALDAGLPITVPGMQVDRRCGSGLQAVIQACLQVRSGDHDLVVAGGAESMSNVAFYSTDMRWGGARTGVQIHDGLARGRTTAGGKFHPVPGGMLETAENLRREYHISRTEQDELAVRSHQRAVAAQSEGVLAEEIIPVPVREETISVDEHPRADTTVEALAKLKPVLLKQDPEATVTAGNSSGQNDAASMCIVTTPEKAAELGLKPLVRLVSWGSAGVAPDLMGIGPVPATEVALAKAGLTLADIDLIELNEAFAAQALAVMREWKFGEADHERTNVRGSGISLGHPVGATGGRMLATLARELHRREARYGLETMCIGGGQGLAAVFERVQ 405
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397        
                                                                                                                                                                                                                                         211|                                                                                                                                                                                             
                                                                                                                                                                                                                                          216                                                                                                                                                                                             


Chain C from PDB  Type:PROTEIN  Length:397
                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee...ee........hhhhhhhhhhhhhhhhhh.hhhhh..eeee.........hhhhhhhhhh.......eeeeehhhhhhhhhhhhhhhhhhh....eeeeeeeee.hhh.eee..............eehhhhhhhhh........hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.hhhhhh..eee..eee.........hhhhhhh......................eeeeeeeeeehhhhhhhhh....eeeeeeeeee.hhhhhhhhhhhhhhhhhhhh..hhhhh.eeee...hhhhhhhhhhhh....hhhhh.....hhhhhh.hhhhhhhhhhhhhhhhhhhhh..eeeeeeee...eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cbq C   4 RDAVICEPVRTPIGRYGGMFRSLTAVDLGVTALKGLLERTGIAADQVEDVILGHCYPNSEAPAIGRVVALDAGLPITVPGMQVDRRCGSGLQAVIQACLQVRSGDHDLVVAGGAESMSNVAFYSTDMRWGGARTGVQIHDGLARGRTTAGGKFHPVPGGMLETAENLRREYHISRTEQDELAVRSHQRAVAAQSEGVLAEEIIPVPVREETISVDEHPRDTTVEALAKLKPVLLKQDPEATVTAGNSSGQNDAASMCIVTTPEKAAELGLKPLVRLVSWGSAGVAPDLMGIGPVPATEVALAKAGLTLADIDLIELNEAFAAQALAVMREWKFGEADHERTNVRGSGISLGHPVGATGGRMLATLARELHRREARYGLETMCIGGGQGLAAVFERVQ 405
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       217       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       
                                                                                                                                                                                                                                         211|       226|                                                                                                                                                                                 
                                                                                                                                                                                                                                          216        228                                                                                                                                                                                 


Chain D from PDB  Type:PROTEIN  Length:398
                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee...ee........hhhhhhhhhhhhhhhhhh.hhhhh..eeee.........hhhhhhhhhh.......eeeeehhhhhhhhhhhhhhhhhhh....eeeeeeeee.hhh.eee..............eehhhhhhhhh.........hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.hhhhhh..ee...ee..........hhhhhh.......................eeeeeeeeeehhhhhhhhh..eeeeeeeeeeee.hhhhhhhhhhhhhhhhhhhh..hhhhh.eeee...hhhhhhhhhhhh....hhhhhh....hhhhhh.hhhhhhhhhhhhhhhhhhhhh..eeeeeeee...eeeeeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cbq D   4 RDAVICEPVRTPIGRYGGMFRSLTAVDLGVTALKGLLERTGIAADQVEDVILGHCYPNSEAPAIGRVVALDAGLPITVPGMQVDRRCGSGLQAVIQACLQVRSGDHDLVVAGGAESMSNVAFYSTDMRWGGARTGVQIHDGLARGRTTAGGKFHPVPGGMLETAENLRREYHISRTEQDELAVRSHQRAVAAQSEGVLAEEIIPVPVRETISVDEHPRADTTVEALAKLKPVLLKQDPEATVTAGNSSGQNDAASMCIVTTPEKAAELGLKPLVRLVSWGSAGVAPDLMGIGPVPATEVALAKAGLTLADIDLIELNEAFAAQALAVMREWKFGEADHERTNVRGSGISLGHPVGATGGRMLATLARELHRREARYGLETMCIGGGQGLAAVFERVQE 406
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398        
                                                                                                                                                                                                                                         211|                                                                                                                                                                                             
                                                                                                                                                                                                                                          217                                                                                                                                                                                             


Chain E from PDB  Type:PROTEIN  Length:400
                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee...ee........hhhhhhhhhhhhhhhhhh.hhhhh..eeee.........hhhhhhhhhh.......eeeeehhhhhhhhhhhhhhhhhhh....eeeeeeeee.hhh.eee..............eehhhhhhhhh........hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.hhhhhh..eeee...eeee..........hhhhhh.......................eeeeeeeeeehhhhhhhhh..eeeeeeeeeeee.hhhhhhhhhhhhhhhhhhhh..hhhhh.eeee...hhhhhhhhhhhh....hhhhh....hhhhhh.hhhhhhhhhhhhhhhhhhhhh..eeeeeeee...eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cbq E   4 RDAVICEPVRTPIGRYGGMFRSLTAVDLGVTALKGLLERTGIAADQVEDVILGHCYPNSEAPAIGRVVALDAGLPITVPGMQVDRRCGSGLQAVIQACLQVRSGDHDLVVAGGAESMSNVAFYSTDMRWGGARTGVQIHDGLARGRTTAGGKFHPVPGGMLETAENLRREYHISRTEQDELAVRSHQRAVAAQSEGVLAEEIIPVPVRTDGEETISVDEHPRADTTVEALAKLKPVLLKQDPEATVTAGNSSGQNDAASMCIVTTPEKAAELGLKPLVRLVSWGSAGVAPDLMGIGPVPATEVALAKAGLTLADIDLIELNEAFAAQALAVMREWKFGADHERTNVRGSGISLGHPVGATGGRMLATLARELHRREARYGLETMCIGGGQGLAAVFERVQ 405
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       214       224       234       244       254       264       274       284       294       304       314       324       334       345       355       365       375       385       395       405
                                                                                                                                                                                                                                          212|                                                                                                                             342|                                                             
                                                                                                                                                                                                                                           214                                                                                                                              344                                                             


Chain F from PDB  Type:PROTEIN  Length:393
                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee...ee........hhhhhhhhhhhhhhhhhh.hhhhh..eeee.........hhhhhhhhhh.......eeeeehhhhhhhhhhhhhhhhhhh....eeeeeeeee.....eee..............eehhhhhhhhh........hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.hhhhhh..ee...ee..........hhhhhh.....hhhhh...........eeeeeeeeeehhhhhhhh...eeeeeeeeeeee.hhhhhhhhhhhhhhhhhhhhh.hhhhh.eeee...hhhhhhhhhhhh...hhhhh.....hhhhhh.hhhhhhhhhhhhhhhhhhhhh..eeeeeeee...eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cbq F   4 RDAVICEPVRTPIGRYGGMFRSLTAVDLGVTALKGLLERTGIAADQVEDVILGHCYPNSEAPAIGRVVALDAGLPITVPGMQVDRRCGSGLQAVIQACLQVRSGDHDLVVAGGAESMSNVAFYSTDMRWGGARTGVQIHDGLARGRTTAGGKFHPVPGGMLETAENLRREYHISRTEQDELAVRSHQRAVAAQSEGVLAEEIIPVPVEETISVDEHPRADTTVEALAKLKPVLLKQDPEATTAGNSGQNDAASMCIVTTPEKAAELGLKPLVRLVSWGSAGVAPDLMGIGPVPATEVALAKAGLTLADIDLIELNEAFAAQALAVMREWKFGADHERTNVRGSGISLGHPVGATGGRMLATLARELHRREARYGLETMCIGGGQGLAAVFERV 404
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203      |218       228       238       248||   ||260       270       280       290       300       310       320       330       340 ||    351       361       371       381       391       401   
                                                                                                                                                                                                                                        210|                              249| 255|                                                                                  342|                                                            
                                                                                                                                                                                                                                         216                               251  257                                                                                   344
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CBQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CBQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CBQ)

(-) Gene Ontology  (3, 3)

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 Related Entries

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        A0QUH3_MYCS2 | A0QUH3: 4zrc 5byv 5bz4

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