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(-) Description

Title :  CRYSTAL STRUCTURE OF MSM-13, A PUTATIVE T1-LIKE THIOLASE FROM MYCOBACTERIUM SMEGMATIS
 
Authors :  N. Janardan, R. K. Harijan, T. R. Keima, R. Wierenga, M. R. N. Murthy
Date :  12 May 15  (Deposition) - 18 May 16  (Release) - 18 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Thiolase, Mycobacterium Smegmatis, T1-Like, Tetrameric, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Janardan, R. K. Harijan, T. R. Kiema, R. K. Wierenga, M. R. Murthy
Structural Characterization Of A Mitochondrial 3-Ketoacyl-Coa (T1)-Like Thiolase From Mycobacterium Smegmatis
Acta Crystallogr. , Sect. D V. 71 2479 2015
PubMed-ID: 26627655  |  Reference-DOI: 10.1107/S1399004715019331

(-) Compounds

Molecule 1 - BETA-KETOTHIOLASE
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: MSMEG_2207
    Organism Scientific: MYCOBACTERIUM SMEGMATIS STR. MC2 155
    Organism Taxid: 246196
    Strain: MC2 155

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4ZRC)

(-) Sites  (0, 0)

(no "Site" information available for 4ZRC)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ZRC)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4ZRC)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZRC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZRC)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZRC)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:391
                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee...ee........hhhhhhhhhhhhhhhhh..hhhhh..eeee.........hhhhhhhhhh.......eeeeehhhhhhhhhhhhhhhhhhh....eeeeeeeee.hhh.eee..............eehhhhhh...........hhhhhhhhhhhhhhh......hhhhhhhhhhhhh.hhhhhh..eee..eee..........hhhhhh...................eeeeeeeeeehhhhhhhh...eeeeeeeeeeee.hhhhhhhhhhhhhhhhhhhh..hhhhh.eeee...hhhhhhhhhhhh..hhhhhhh.....hhhhhh.hhhhhhhhhhhhhhhhhhhh...eeeeeeee...eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zrc A   3 MRDAVICEPVRTPIGRYGGMFRSLTAVDLGVTALKGLLERTGIAADQVEDVILGHCYPNSEAPAIGRVVALDAGLPITVPGMQVDRRCGSGLQAVIQACLQVRSGDHDLVVAGGAESMSNVAFYSTDMRWGGARTGVQIHDGLARGRTTAGGKFHPVPGGMLETAENLRREYHISRTEAVRSHQRAVAAQSEGVLAEEIIPVPVREETISVDEHPRADTVELAKLKPVLKQDPETVTAGNSSGQNDAASMCIVTTPEKAAELGLKPLVRLVSWGSAGVAPDLMGIGPVPATEVALAKAGLTLADIDLIELNEAFAAQALAVMREWKFGEADHERTNVRGSGISLGHPVGATGGRMLATLARELHRREARYGLETMCIGGGQGLAAVFERVQ 405
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       186       196       206    || 220       231||     243   ||  254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404 
                                                                                                                                                                                                           180|                       211|         228| ||   240|  247|                                                                                                                                                            
                                                                                                                                                                                                            185                        216          230 ||    242   249                                                                                                                                                            
                                                                                                                                                                                                                                                      232|                                                                                                                                                                         
                                                                                                                                                                                                                                                       234                                                                                                                                                                         


Chain B from PDB  Type:PROTEIN  Length:397
                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee...ee........hhhhhhhhhhhhhhhhhh.hhhhh..eeee.........hhhhhhhhhh.......eeeeehhhhhhhhhhhhhhhhhhh....eeeeeeeee.hhh.eee...........eeeeehhhhhh...........hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh....................hhhhhhh.....................eeeeeeeeeehhhhhhhh.....eeeeeeeeee.hhhhhhhhhhhhhhhhhhhhh.......eeee...hhhhhhhhhhhh..hhhhhhhh....hhhhhh.hhhhhhhhhhhhhhhhhhhh...eeeeeeee...eeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zrc B   3 MRDAVICEPVRTPIGRYGGMFRSLTAVDLGVTALKGLLERTGIAADQVEDVILGHCYPNSEAPAIGRVVALDAGLPITVPGMQVDRRCGSGLQAVIQACLQVRSGDHDLVVAGGAESMSNVAFYSTDMRWGGARTGVQIHDGLARGRTTAGGKFHPVPGGMLETAENLRREYHISRTEQDELAVRSHQRAVAAQSEGVLAEEIIPVPEETISVDEHPRADTTVEALAKLKPVLLKQDPEAVTAGNSSGQNDAASMCIVTTPEKAAELGLKPLVRLVSWGSAGVAPDLMGIGPVPATEVALAKAGLTLADIDLIELNEAFAAQALAVMREWKFGEADHERTNVRGSGISLGHPVGATGGRMLATLARELHRREARYGLETMCIGGGQGLAAVFERVQE 406
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202      |218       228       238       248|      259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       
                                                                                                                                                                                                                                        209|                             248|                                                                                                                                                            
                                                                                                                                                                                                                                         216                              250                                                                                                                                                            


Chain C from PDB  Type:PROTEIN  Length:396
                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeee...ee........hhhhhhhhhhhhhhhhh..hhhhh..eeee.........hhhhhhhhhh.......eeeeehhhhhhhhhhhhhhhhhhh....eeeeeeeee.hhh.eee..........eeeeehhhhhh...........hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh....eee...eee..........hhhhhhh...................eeeeeeeeeehhhhhhhh.....eeeeeeeeee.hhhhhhhhhhhhhhhhhhhh..hhhhh.eeee...hhhhhhhhhhhh..hhhhhhhh....hhhhhh.hhhhhhhhhhhhhhhhhhhh...eeeeeeee...eeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4zrc C   4 RDAVICEPVRTPIGRYGGMFRSLTAVDLGVTALKGLLERTGIAADQVEDVILGHCYPNSEAPAIGRVVALDAGLPITVPGMQVDRRCGSGLQAVIQACLQVRSGDHDLVVAGGAESMSNVAFYSTDMRWGGRTGVQIHDGLARGRTTAGGKFHPVPGGMLETAENLRREYHISRTEQDELAVRSHQRAVAAQSEGVLAEEIIPVPVRTEETISVDEHPRADTTVEALAKLKPVKQDPETVTAGNSSGQNDAASMCIVTTPEKAAELGLKPLVRLVSWGSAGVAPDLMGIGPVPATEVALAKAGLTLADIDLIELNEAFAAQALAVMREWKFGEADHERTNVRGSGISLGHPVGATGGRMLATLARELHRREARYGLETMCIGGGQGLAAVFERVQE 406
                                    13        23        33        43        53        63        73        83        93       103       113       123       133||     144       154       164       174       184       194       204       217       227       237  ||   250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400      
                                                                                                                                                            134|                                                                         212|                     240| 247|                                                                                                                                                             
                                                                                                                                                             136                                                                          216                      243  249                                                                                                                                                             


Chain D from PDB  Type:PROTEIN  Length:395
                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee...ee........hhhhhhhhhhhhhhhhh..hhhhh..eeee.........hhhhhhhhhh.......eeeeehhhhhhhhhhhhhhhhhhh....eeeeeeeee.hhh.eee..............eehhhhhh...........hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh....ee...ee..........hhhhhh.....................eeeeeeeeeehhhhhhhh...eeeeeeeeeeee.hhhhhhhhhhhhhhhhhhhhh.hhhhh.eeee...hhhhhhhhhhhh..hhhhhhhh....hhhhhh.hhhhhhhhhhhhhhhhhhhh...eeeeeeee...eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zrc D   4 RDAVICEPVRTPIGRYGGMFRSLTAVDLGVTALKGLLERTGIAADQVEDVILGHCYPNSEAPAIGRVVALDAGLPITVPGMQVDRRCGSGLQAVIQACLQVRSGDHDLVVAGGAESMSNVAFYSTDMRWGGARTGVQIHDGLARGRTTAGGKFHPVPGGMLETAENLRREYHISRTEQDELAVRSHQRAVAAQSEGVLAEEIIPVPVRETISVDEHPRADTTVEALALKPVLKQDPEATVTAGNSSGQNDAASMCIVTTPEKAAELGLKPLVRLVSWGSAGVAPDLMGIGPVPATEVALAKAGLTLADIDLIELNEAFAAQALAVMREWKFGEADHERTNVRGSGISLGHPVGATGGRMLATLARELHRREARYGLETMCIGGGQGLAAVFERVQ 405
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       218       228      |239 ||    250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400     
                                                                                                                                                                                                                                         211|               235| 241|                                                                                                                                                                  
                                                                                                                                                                                                                                          217                237  243
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZRC)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZRC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZRC)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)

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        A0QUH3_MYCS2 | A0QUH3: 5byv 5bz4 5cbq

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