5BQF - JenaLib

Title :   PROBABLE 2-HYDROXYACID DEHYDROGENASE FROM RHIZOBIUM ETLI CFN 42 IN COMPLEX WITH NADP, HEPES AND L(+)-TARTARIC ACID

Authors :   K. M. Langner, I. G. Shabalin, K. B. Handing, O. A. Gasiorowska, M. Stead B. S. Hillerich, S. Chowdhury, J. Hammonds, M. D. Zimmerman, N. Al Oba J. Bonanno, R. Seidel, S. C. Almo, W. Minor, New York Structural Gen Research Consortium (Nysgrc)

Date :   29 May 15 (Deposition) - 17 Jun 15 (Release) - 17 Jun 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.45

Chains :   Asym. Unit : A
Biol. Unit 1: A  (2x)

Keywords :   Dehydrogenase, Structural Genomics, Psi-Biology, New York Structural Genomics Research Consortium, Nysgrc, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   K. M. Langner, I. G. Shabalin, K. B. Handing, O. A. Gasiorowska, S. Chowdhury, M. D. Zimmerman, W. Minor
Probable 2-Hydroxyacid Dehydrogenase From Rhizobium Etli Cf 42 In Complex With Nadp, Hepes And L-Tartaric Acid
To Be Published
PubMed: search

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (6, 6)

Sites (6, 6)

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	PHE A:13 , TRP A:53 , GLY A:72 , HIS A:282 , SER A:287 , LEU A:292 , TLA A:404 , HOH A:564 , HOH A:671 , HOH A:690	binding site for residue EPE A 401
2	AC2	SOFTWARE	VAL A:94 , ARG A:96 , THR A:99 , ILE A:149 , HOH A:772	binding site for residue PEG A 402
3	AC3	SOFTWARE	ALA A:74 , ARG A:92 , MET A:102 , GLY A:146 , LEU A:147 , GLY A:148 , ILE A:149 , LEU A:150 , TRP A:168 , SER A:169 , ARG A:170 , THR A:171 , LEU A:199 , LEU A:200 , PRO A:201 , GLU A:205 , ALA A:232 , GLY A:233 , ARG A:234 , ASP A:258 , HIS A:282 , ALA A:285 , TYR A:319 , TLA A:404 , HOH A:505 , HOH A:515 , HOH A:526 , HOH A:531 , HOH A:547 , HOH A:548 , HOH A:561 , HOH A:604 , HOH A:605 , HOH A:645 , HOH A:652 , HOH A:654 , HOH A:673 , HOH A:757	binding site for residue NAP A 403
4	AC4	SOFTWARE	GLY A:73 , ALA A:74 , ARG A:234 , HIS A:282 , ALA A:285 , VAL A:286 , SER A:287 , EPE A:401 , NAP A:403 , HOH A:564 , HOH A:568	binding site for residue TLA A 404
5	AC5	SOFTWARE	THR A:241 , SER A:245 , HOH A:707 , HOH A:779 , HOH A:847	binding site for residue NA A 405
6	AC6	SOFTWARE	THR A:241 , PRO A:270 , HOH A:860	binding site for residue CL A 406

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:317
                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee..hhhhhhhhhh.......eee..hhhhh........eeeee....hhhhhh....eeee..................ee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhh.eeeee..hhhhhhhhhhhhhhh.eeeee..........eeehhhhhhhhhhh..eeee....hhhhh...hhhhhh...........eeee..hhhhhhhhhhhhhhhh....eeee...........hhhhhh..eee........hhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5bqf A   3 VRPPVLVDIKFNPEGVDRVLKTAFADRGSINLADPANRERDFSETEYALLWKPDADLFRRAPNLKVIFSGGAGVDHIIGMAGLPDIPIVRFVDRSLTTRMSEWVVMQCLMHLRGQYGHDSHQRRREWAKLIAPEAAEVTVGVMGLGILGQDAVAKLKVMGFNVIGWSRTRKTIEGVETFDAGELDRFLAKTDILVGLLPLTPETTGFYDSELFKKLRRDGALGQPVFINAGRGKSQIETDIVSAVREGTLGGASLDVFEVEPLATDSPLWELENVFITPHDAAVSEENALFRHVEMQIARFERGEPLQFVIDRAAGY 319
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312

Legend:		→ Mismatch	(orange background)
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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (3, 3)

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