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(-) Description

Title :  CRYSTAL STRUCTURE OF OXA-58 WITH THE SUBSTRATE-BINDING CLEFT IN A CLOSED STATE
 
Authors :  H. Saino, T. Sugiyabu, M. Miyano
Date :  27 May 15  (Deposition) - 30 Dec 15  (Release) - 27 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (3x)
Keywords :  Beta-Lactamase, Carbapenem, Multi-Drug Resistance, Carbamic Acid, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Saino, T. Sugiyabu, G. Ueno, M. Yamamoto, Y. Ishii, M. Miyano
Crystal Structure Of Oxa-58 With The Substrate-Binding Clef In A Closed State: Insights Into The Mobility And Stability Of The Oxa-58 Structure
Plos One V. 10 45869 2015
PubMed-ID: 26701320  |  Reference-DOI: 10.1371/JOURNAL.PONE.0145869

(-) Compounds

Molecule 1 - BETA-LACTAMASE
    Chains: A
    EC Number: 3.5.2.6
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Plasmid: PCOLDI
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: BLAOXA-58, BLA-OXA-58, BLA-OXA58
    Mutation: YES
    Organism Scientific: ACINETOBACTER BAUMANNII
    Organism Taxid: 470

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A
Biological Unit 2 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric Unit (2, 2)
No.NameCountTypeFull Name
1KCX1Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
2SO41Ligand/IonSULFATE ION
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
1KCX1Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
2SO41Ligand/IonSULFATE ION
Biological Unit 2 (2, 6)
No.NameCountTypeFull Name
1KCX3Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
2SO43Ligand/IonSULFATE ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:113 , PHE A:114 , LYS A:115 , LYS A:264binding site for residue SO4 A 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5BOH)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Gly A:172 -Pro A:173
2Asp A:228 -Pro A:229

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5BOH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5BOH)

(-) Exons   (0, 0)

(no "Exon" information available for 5BOH)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:237
                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeee....eeeee.hhhhhhh...hhhhhhhhhhhhhhhh.................hhhhh...hhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh............hhhhhh....hhhhhhhhhhhhhh.....hhhhhhhhhhhheeeee..eeeeeeeeee.....eeeeeeeeee.....eeeeeeeeee......hhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5boh A  44 VQALFNEISADAVFVTYDGQNIKKYGTHLDRAKTAYIPASTFkIANALIGLENHKATSTEIFKWDGKPRFFKAWDKDFTLGEAMQASTVPVYQELARRIGPSLMQSELQRIGYGNMQIGTEVDQFWLKGPLTITPIQEVKFVYDLAQGQLPFKPEVQQQVKEMLYVERRGENRLYAKSGWGMAVDPQVGWYVGFVEKADGQVVAFALNMQMKAGDDIALRKQLSLDVLDKLGVFHYL 280
                                    53        63        73        83  |     93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       
                                                                     86-KCX
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5BOH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5BOH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5BOH)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

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UniProtKB/TrEMBL
        Q2TR58_ACIBA | Q2TR58: 4oh0 4y0o 4y0t 4y0u

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