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(-) Description

Title :  CRYSTAL STRUCTURE OF OXA-58 CARBAPENEMASE
 
Authors :  C. A. Smith, N. T. Antunes, M. Toth, S. B. Vakulenko
Date :  16 Jan 14  (Deposition) - 26 Feb 14  (Release) - 02 Apr 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.30
Chains :  Asym./Biol. Unit :  A
Keywords :  Beta-Lactamase, Antibiotic Resistance, Carboxylated Lysine, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. A. Smith, N. T. Antunes, M. Toth, S. B. Vakulenko
Crystal Structure Of Carbapenemase Oxa-58 From Acinetobacte Baumannii.
Antimicrob. Agents Chemother. V. 58 2135 2014
PubMed-ID: 24468777  |  Reference-DOI: 10.1128/AAC.01983-13

(-) Compounds

Molecule 1 - BETA-LACTAMASE OXA-58
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: BLAOXA-58, BLA-OXA-58, BLA-OXA58
    Organism Scientific: ACINETOBACTER BAUMANNII
    Organism Taxid: 470
    Synonym: CARBAPENEM-HYDROLYZING BETA-LACTAMASE OXA-58, CARBAPENEM- HYDROLYZING OXACILLINASE, CARBAPENEM-HYDROLYZING OXACILLINASE OXA-58, OXA-58, OXA-58 OXACILLINASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2KCX1Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:221 , GLY A:222 , ARG A:263 , HOH A:621 , HOH A:706BINDING SITE FOR RESIDUE CL A 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4OH0)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gly A:172 -Pro A:173
2Asp A:228 -Pro A:229

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4OH0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4OH0)

(-) Exons   (0, 0)

(no "Exon" information available for 4OH0)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:243
                                                                                                                                                                                                                                                                                   
               SCOP domains d4oh0a_ A: automated matches                                                                                                                                                                                                                        SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh....eeeeee....eeeee.hhhhhhh...hhhhhhhhhhhhhhhh.................hhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhh....hhhhhhhhhhhhhhh....hhhhhhhhhhhheeeee..eeeeeeeeee.....eeeeeeeeee.....eeeeeeeeee......hhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4oh0 A  38 SIIDQNVQALFNEISADAVFVTYDGQNIKKYGTHLDRAKTAYIPASTFkIANALIGLENHKATSTEIFKWDGKPRFFKAWDKDFTLGEAMQASTVPVYQELARRIGPSLMQSELQRIGYGNMQIGTEVDQFWLKGPLTITPIQEVKFVYDLAQGQLPFKPEVQQQVKEMLYVERRGENRLYAKSGWGMAVDPQVGWYVGFVEKADGQVVAFALNMQMKAGDDIALRKQLSLDVLDKLGVFHYL 280
                                    47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277   
                                                                           86-KCX
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Multi-domain proteins (alpha and beta) (2421)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4OH0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4OH0)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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UniProtKB/TrEMBL
        Q2TR58_ACIBA | Q2TR58: 4y0o 4y0t 4y0u 5boh

(-) Related Entries Specified in the PDB File

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