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(-) Description

Title :  PROTEIN-PROTEIN INTERACTION
 
Authors :  Y. Zhao, H. Jiang, X. Yang, F. Jiang, K. Song, J. Zhang
Date :  27 May 16  (Deposition) - 31 May 17  (Release) - 31 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.99
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Apc, Asef, Colon Cancer, Drug Discovery, Protein Binding-Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Jiang, Y. Zhao, J. Zhang
Apc-Asef Interaction
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ADENOMATOUS POLYPOSIS COLI PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 407-751
    Gene: APC, DP2.5
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PROTEIN APC,DELETED IN POLYPOSIS 2.5
 
Molecule 2 - PHQ-ALA-GLY-GLU-ALA-XYC-TYR-GLU
    Chains: B
    Engineered: YES
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 5)

Asymmetric/Biological Unit (5, 5)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2NH21Mod. Amino AcidAMINO GROUP
3PHQ1Mod. Amino AcidBENZYL CHLOROCARBONATE
4SO41Ligand/IonSULFATE ION
5XYC1Mod. Amino Acid(2~{S})-2-AZANYL-3-CYCLOPENTYL-PROPANOIC ACID

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:733 , LYS A:738binding site for residue SO4 A 801
2AC2SOFTWAREGLN A:480 , SER A:521 , LYS A:523 , GLY A:524 , LYS A:714binding site for residue GOL A 802

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5B6G)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5B6G)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5B6G)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5B6G)

(-) Exons   (0, 0)

(no "Exon" information available for 5B6G)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:331
                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.hhhhhhhhhh..hhhhhhhhhh........hhhhhhhhhhhhhhhhhhh.hhhhhhhhhh.hhhhhhhhhh...hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5b6g A 403 HHHMLHLLEQIRAYCETCWEWQEAHNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDAN 741
                                   412       422    || 440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740 
                                                  427|                                                                                                                                                                                                                                                                                                                 
                                                   436                                                                                                                                                                                                                                                                                                                 


Chain B from PDB  Type:PROTEIN  Length:9
                                         
               SCOP domains --------- SCOP domains
               CATH domains --------- CATH domains
               Pfam domains --------- Pfam domains
         Sec.struct. author ......... Sec.struct. author
                 SAPs(SNPs) --------- SAPs(SNPs)
                    PROSITE --------- PROSITE
                 Transcript --------- Transcript
                 5b6g B   0 xAGEAxYEx   8
                            |    |  |
                            0-PHQ|  |
                                 5-XYC
                                    8-NH2
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5B6G)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5B6G)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5B6G)

(-) Gene Ontology  (77, 77)

Asymmetric/Biological Unit(hide GO term definitions)

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  5b6g
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  APC_HUMAN | P25054
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        APC_HUMAN | P25054: 1deb 1emu 1jpp 1m5i 1t08 1th1 1v18 2rqu 3au3 3nmw 3nmx 3nmz 3qhe 3rl7 3rl8 3t7u 4g69 4yje 4yjl 4yk6 5iz6 5iz8 5iz9 5iza

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5B6G)