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(-) Description

Title :  THE 0.86 ANGSTROM STRUCTURE OF ELASTASE CRYSTALLIZED IN HIGH-STRENGTH AGAROSE HYDROGEL
 
Authors :  S. Sugiyama, N. Shimizu, M. Maruyama, G. Sazaki, H. Adachi, K. Takano, S. Murakami, T. Inoue, Y. Mori, H. Matsumura
Date :  15 Jun 15  (Deposition) - 08 Jul 15  (Release) - 08 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  0.86
Chains :  Asym./Biol. Unit :  A
Keywords :  Elastase, High-Strength Agarose, Hydrogel, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. Sugiyama, M. Maruyama, G. Sazaki, M. Hirose, H. Adachi, K. Takano, S. Murakami, T. Inoue, Y. Mori, H. Matsumura
Growth Of Protein Crystals In Hydrogels Prevents Osmotic Shock
J. Am. Chem. Soc. V. 134 5786 2012
PubMed-ID: 22435400  |  Reference-DOI: 10.1021/JA301584Y

(-) Compounds

Molecule 1 - CHYMOTRYPSIN-LIKE ELASTASE FAMILY MEMBER 1
    ChainsA
    EC Number3.4.21.36
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GeneCELA1, ELA1
    Organism CommonPIG
    Organism ScientificSUS SCROFA
    Organism Taxid9823
    SynonymELASTASE-1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1SO42Ligand/IonSULFATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:240 , HOH A:428 , HOH A:493binding site for residue SO4 A 301
2AC2SOFTWAREHIS A:60 , GLN A:200 , GLY A:201 , SER A:203 , HOH A:461 , HOH A:594binding site for residue SO4 A 302

(-) SS Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1A:45 -A:61
2A:142 -A:209
3A:173 -A:189
4A:199 -A:229

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5AVD)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5AVD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5AVD)

(-) Exons   (0, 0)

(no "Exon" information available for 5AVD)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:240
                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....ee........eeeeeeee..eeeeeeeeeeee..eeeehhhhhh....eeeee............eeeeeeeeee.......hhhhh...eeeee...........................eeeee..............eeee..eehhhhhh....hhhhh...eeee...............eeeeee..eeeeeeeeee............eeeee...hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5avd A  16 VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVDRELTFRVVVGEHNLNQNNGTEQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAGTILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVCAGGDGVRSGCQGDSGGPLHCLVNGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVIASN 255
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5AVD)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5AVD)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5AVD)

(-) Gene Ontology  (23, 23)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CELA1_PIG | P007721b0e 1bma 1btu 1c1m 1e34 1e35 1e36 1e37 1e38 1eai 1eas 1eat 1eau 1ela 1elb 1elc 1eld 1ele 1elf 1elg 1esa 1esb 1est 1fle 1fzz 1gvk 1gwa 1h9l 1hax 1hay 1haz 1hb0 1hv7 1inc 1jim 1l0z 1l1g 1lka 1lkb 1lvy 1mcv 1mmj 1nes 1okx 1qgf 1qix 1qnj 1qr3 1uo6 1uvo 1uvp 2a7c 2a7j 2bb4 2bd2 2bd3 2bd4 2bd5 2bd7 2bd8 2bd9 2bda 2bdb 2bdc 2blo 2blq 2cv3 2d26 2de8 2de9 2est 2fo9 2foa 2fob 2foc 2fod 2foe 2fof 2fog 2foh 2g4t 2g4u 2h1u 2iot 2oqu 2v0b 2v35 3e3t 3est 3hgn 3hgp 3mnb 3mnc 3mns 3mnx 3mo3 3mo6 3mo9 3moc 3mty 3mu0 3mu1 3mu4 3mu5 3mu8 3odd 3odf 3uou 4est 4gvu 4ym9 5est 6est 7est 8est 9est

(-) Related Entries Specified in the PDB File

5avg 5avh 5avn