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(-) Description

Title :  CRYSTAL STRUCTURE OF MOUSE PI3 KINASE DELTA IN COMPLEX WITH GSK2269557
 
Authors :  K. D. Down, A. Amour, I. R. Baldwin, A. W. J. Cooper, A. M. Deakin, L. M. Fel S. B. Guntrip, C. Hardy, Z. A. Harrison, K. L. Jones, P. Jones, S. E. Keel S. Livia, F. Lucas, C. J. Lunniss, N. J. Parr, E. Robinson, P. Rowland, S D. A. Thomas, G. Vitulli, Y. Washio, N. Hamblin
Date :  26 Aug 15  (Deposition) - 16 Sep 15  (Release) - 07 Oct 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.42
Chains :  Asym./Biol. Unit :  A
Keywords :  Transferase, Pi3 Kinase Delta (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Down, A. Amour, I. R. Baldwin, A. W. J. Cooper, A. M. Deakin, L. M. Felton, S. B. Guntrip, C. Hardy, Z. A. Harrison, K. L. Jones, P. Jones, S. E. Keeling, J. Le, S. Livia, F. Lucas, C. J. Lunniss, N. J. Parr, E. Robinson, P. Rowland, S. Smith, D. A. Thomas, G. Vitulli, Y. Washio, J. N. Hamblin
Optimization Of Novel Indazoles As Highly Potent And Selective Inhibitors Of Phosphoinositide 3-Kinase Gamma For The Treatment Of Respiratory Disease.
J. Med. Chem. V. 58 7381 2015
PubMed-ID: 26301626  |  Reference-DOI: 10.1021/ACS.JMEDCHEM.5B00767

(-) Compounds

Molecule 1 - PHOSPHATIDYLINOSITOL 4,5-BISPHOSPHATE 3-KINASE CATALYTIC SUBUNIT DELTA ISOFORM
    Chains: A
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Fragment: P110 SUBUNIT, 105-1044
    Organism Common: HOUSE MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1VVX1Ligand/Ion6-(1H-INDOL-4-YL)-4-(5-{[4-(1-METHYLETHYL)-1-PIPERAZINYL]METHYL}-1,3-OXAZOL-2-YL)-1H-INDAZOLE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:760 , ILE A:777 , LYS A:779 , ASP A:787 , TYR A:813 , ILE A:825 , GLU A:826 , VAL A:827 , VAL A:828 , ASP A:832 , MET A:900 , ILE A:910 , ASP A:911 , HOH A:3489BINDING SITE FOR RESIDUE VVX A2033

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5AE8)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5AE8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5AE8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5AE8)

(-) Exons   (0, 0)

(no "Exon" information available for 5AE8)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:856
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhh..hhhhhh..hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh..........eeeeeeee.....eeeeeee...hhhhhhhhhhhhhhhhh......hhh.eeeee.....ee....hhhhhhhhhhhhhhh...eeeeeehhhhhhhhhhh..hhhhh..eeeeeeee..........eeeeeeeeee..ee....ee...ee.....eeeeeeeeeee........eeeeeeeee..eeeeeeeee..........eeeeee.ee....................eeeeee...........hhhhhhhhhh.......hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh..hhhhhhhhh...hhhhhhhhhhhhhh....hhhhhhhh......hhhhhhhhhhh....hhhhhhhhhhhhhhhh.......hhhhhhhhhhhh.hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh..eee..eeeeee.ee.hhhhee.......eeeeeee...eeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhh...........eeeee..eeeee....eeehhhhh...........hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh.........eeee....eee................hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5ae8 A  108 RVKKLINSQISLLIGKGLHEFDSLRDPEVNDFRTKMRQFCEEAAAHRQQLGWVEWLQYSFPLQLEPSANRALLVNVKFEGSEESFTFQVSTKDMPLALMACALRKKATVFRQPLVEQPEEYALQVNGRHEYLYGNYPLCHFQYICSCLHSGLTPHLTMVHSSSILAMRDEQSNSLWSLEQPFSIELIEGRKVNADERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYAVVDCPIAWANLMLFDYKDQLKTGERCLYMWPSVLLNPAGTVRGNPNTESAAALVIYLPEVAPHPVYFPALEKILELGRHGERGRITEEEQLQLREILERELYEHEKDLVWKMRHEVQEHFPEALARLLLVTKWNKHEDVAQMLYLLCSWPELPVLSALELLDFSFPDCYVGSFAIKSLRKLTDDELFQYLLQLVQVLKYESYLDCELTKFLLGRALANRKIGHFLFWHLRSEMHVPSVALRFGLIMEAYCRGSTHHMKVLMKQGEALSKLKALNDFVKVSSQKTTKPQTKEMMHMCMRQETYMEALSHLQSPLDPSTLLEEVCVEQCTFMDSKMKPLWIMYSSEEAGSAGNVGIIFKNGDDLRQDMLTLQMIQLMDVLWKQEGLDLRMTPYGCLPTGDRTGLIEVVLHSDTIANIQLNKSNMAATAAFNKDALLNWLKSKNPGEALDRAIEEFTLSCAGYCVATYVLGIGDRHSDNIMIRESGQLFHIDFGHFLGNERVPFILTYDFVHVIQQGKTNNSEKFERFRGYCERAYTILRRHGLLFLHLFALMRAAGLPELSCSKDIQYLKDSLALGKTEEEALKHFRVKFNEALRESWKTKVN 1032
                                   117       127       137       147       157       167       188       198       208       218       228       238       248       258       268       278       288  ||   321       331       341       351       361       371       381       391      |417       427       437       453       463       473       483       493       503       513   ||  527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697       707       717       727       737       747       757       767       777       787       797       807       817       827       837       847       857       867       877       887       897       907       917||     936       946       956       966       976       986       996      1006      1016      1026      
                                                                                             175|                                                                                                     291|                                                                                398|                           445|                                                              517|                                                                                                                                                                                                                                                                                                                                                                                                         918|                                                                                                        
                                                                                              187                                                                                                      315                                                                                 415                            452                                                               522                                                                                                                                                                                                                                                                                                                                                                                                          928
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5AE8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5AE8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5AE8)

(-) Gene Ontology  (29, 34)

Asymmetric/Biological Unit(hide GO term definitions)

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  Q3UDT3_MOUSE | Q3UDT3
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PK3CD_MOUSE | O35904: 2wxf 2wxg 2wxh 2wxi 2wxj 2wxk 2wxl 2wxm 2wxn 2wxo 2wxp 2wxq 2wxr 2x38 4ajw 4v0i 4xe0 5ae9 5i4u 5i6u 5is5 5l72 5ncy 5ncz 5t27 5t28 5t2b 5t2d 5t2g 5t2i 5t2l 5t2m 5t7f 5t8i
        Q3UDT3_MOUSE | Q3UDT3: 2wxf 2wxg 2wxh 2wxi 2wxj 2wxk 2wxl 2wxm 2wxn 2wxo 2wxp 2wxq 2wxr 2x38 5ae9 5is5 5l72

(-) Related Entries Specified in the PDB File

5ae9 CRYSTAL STRUCTURE OF MOUSE PI3 KINASE DELTA IN COMPLEX WITH GSK2292767