4AJW - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   DISCOVERY AND OPTIMIZATION OF NEW BENZIMIDAZOLE- AND BENZOXAZOLE-PYRIMIDONE SELECTIVE PI3KBETA INHIBITORS FOR THE TREATMENT OF PHOSPHATASE AND TENSIN HOMOLOGUE (PTEN)-DEFICIENT CANCERS

Authors :   V. Certal, F. Halley, A. Virone-Oddos, C. Delorme, A. Karlsson, A. Rak, F. Thompson, B. Filoche-Romme, Y. El-Ahmad, J. C. Carry, P. Y. Abecass P. Lejeune, H. Bonnevaux, J. P. Nicolas, T. Bertrand, J. P. Marquette, T. Benard, P. Below, I. Vade, F. Chatreaux, G. Lebourg, F. Pilorge, O. Angouillant-Boniface, A. Louboutin, C. Lengauer, L. Schio

Date :   20 Feb 12 (Deposition) - 16 May 12 (Release) - 29 Mar 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.80

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Transferase, P110D (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   V. Certal, F. Halley, A. Virone-Oddos, C. Delorme, A. Karlsson, A. Rak F. Thompson, B. Filoche-Romm, Y. El-Ahmad, J. C. Carry, P. Y. Abecassis, P. Lejeune, L. Vincent, H. Bonnevaux, J. P. Nicolas, T. Bertrand, J. P. Marquette, N. Michot, T. Benard, P. Below, I. Vade, F. Chatreaux, G. Lebourg, F. Pilorge, O. Angouillant-Boniface, A. Louboutin, C. Lengauer, L. Schio
Discovery And Optimization Of New Benzimidazole- And Benzoxazole-Pyrimidone Selective Pi3Kbeta Inhibitors For Th Treatment Of Phosphatase And Tensin Homologue (Pten)-Deficient Cancers.
J. Med. Chem. V. 55 4788 2012
PubMed-ID: 22524426 | Reference-DOI: 10.1021/JM300241B

Molecule 1 - PHOSPHATIDYLINOSITOL-4,5-BISPHOSPHATE 3-KINASE CATALYTIC SUBUNIT DELTA ISOFORM
	Chains	:	A, B
	EC Number	:	2.7.1.153
	Engineered	:	YES
	Expression System	:	SPODOPTERA FRUGIPERDA
	Expression System Cell Line	:	SF21
	Expression System Common	:	FALL ARMYWORM
	Expression System Taxid	:	7108
	Expression System Vector Type	:	BACULOVIRUS
	Fragment	:	RESIDUES 110-1044
	Organism Common	:	HOUSE MOUSE
	Organism Scientific	:	MUS MUSCULUS
	Organism Taxid	:	10090
	Synonym	:	PI3-KINASE SUBUNIT DELTA, PI3K-DELTA, PI3KDELTA, PTDINS-3- KINASE SUBUNIT DELTA, PHOSPHATIDYLINOSITOL-4,5-BISPHOSPHATE 3-KINASE 110 KDA CATALYTIC SUBUNIT DELTA, PTDINS-3-KINASE SUBUNIT P110-DELTA, P110DELTA

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 2)

No.	Name	Count	Type	Full Name
1	VWN	2	Ligand/Ion	2-[(1-METHYL-1H-BENZIMIDAZOL-2-YL)METHYL]-6-MORPHOLIN-4-YLPYRIMIDIN-4(3H)-ONE

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	VWN	1	Ligand/Ion	2-[(1-METHYL-1H-BENZIMIDAZOL-2-YL)METHYL]-6-MORPHOLIN-4-YLPYRIMIDIN-4(3H)-ONE

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	VWN	1	Ligand/Ion	2-[(1-METHYL-1H-BENZIMIDAZOL-2-YL)METHYL]-6-MORPHOLIN-4-YLPYRIMIDIN-4(3H)-ONE

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	PHE A:751 , MET A:752 , PRO A:758 , TRP A:760 , ILE A:777 , LYS A:779 , GLU A:826 , VAL A:828 , MET A:900 , ASP A:911	BINDING SITE FOR RESIDUE VWN A 2027
2	AC2	SOFTWARE	MET B:752 , PRO B:758 , TRP B:760 , ILE B:777 , LYS B:779 , GLU B:826 , VAL B:828 , MET B:900 , ASP B:911	BINDING SITE FOR RESIDUE VWN B 2027

(no "SS Bond" information available for 4AJW)

Asymmetric Unit

No.	Residues
1	Thr A:434	-	Gly A:435
2	Thr B:434	-	Gly B:435

(no "SAP(SNP)/Variant" information available for 4AJW)

Asymmetric Unit (6, 12)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PI3K_RBD	PS51546	Phosphatidylinositol 3-kinase Ras-binding (PI3K RBD) domain profile.	PK3CD_MOUSE	187-278	2	A:187-278 B:187-278
2	PI3K_C2	PS51547	Phosphatidylinositol 3-kinase C2 (PI3K C2) domain profile.	PK3CD_MOUSE	319-476	2	A:321-476 B:320-476
3	PIK_HELICAL	PS51545	PIK helical domain profile.	PK3CD_MOUSE	496-673	2	A:525-674 B:525-674
4	PI3_4_KINASE_3	PS50290	Phosphatidylinositol 3- and 4-kinases family profile.	PK3CD_MOUSE	773-1023	2	A:774-1024 B:774-1024
5	PI3_4_KINASE_1	PS00915	Phosphatidylinositol 3- and 4-kinases signature 1.	PK3CD_MOUSE	777-791	2	A:778-792 B:778-792
6	PI3_4_KINASE_2	PS00916	Phosphatidylinositol 3- and 4-kinases signature 2.	PK3CD_MOUSE	877-897	2	A:878-898 B:878-898

Biological Unit 1 (6, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PI3K_RBD	PS51546	Phosphatidylinositol 3-kinase Ras-binding (PI3K RBD) domain profile.	PK3CD_MOUSE	187-278	1	A:187-278 -
2	PI3K_C2	PS51547	Phosphatidylinositol 3-kinase C2 (PI3K C2) domain profile.	PK3CD_MOUSE	319-476	1	A:321-476 -
3	PIK_HELICAL	PS51545	PIK helical domain profile.	PK3CD_MOUSE	496-673	1	A:525-674 -
4	PI3_4_KINASE_3	PS50290	Phosphatidylinositol 3- and 4-kinases family profile.	PK3CD_MOUSE	773-1023	1	A:774-1024 -
5	PI3_4_KINASE_1	PS00915	Phosphatidylinositol 3- and 4-kinases signature 1.	PK3CD_MOUSE	777-791	1	A:778-792 -
6	PI3_4_KINASE_2	PS00916	Phosphatidylinositol 3- and 4-kinases signature 2.	PK3CD_MOUSE	877-897	1	A:878-898 -

Biological Unit 2 (6, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PI3K_RBD	PS51546	Phosphatidylinositol 3-kinase Ras-binding (PI3K RBD) domain profile.	PK3CD_MOUSE	187-278	1	- B:187-278
2	PI3K_C2	PS51547	Phosphatidylinositol 3-kinase C2 (PI3K C2) domain profile.	PK3CD_MOUSE	319-476	1	- B:320-476
3	PIK_HELICAL	PS51545	PIK helical domain profile.	PK3CD_MOUSE	496-673	1	- B:525-674
4	PI3_4_KINASE_3	PS50290	Phosphatidylinositol 3- and 4-kinases family profile.	PK3CD_MOUSE	773-1023	1	- B:774-1024
5	PI3_4_KINASE_1	PS00915	Phosphatidylinositol 3- and 4-kinases signature 1.	PK3CD_MOUSE	777-791	1	- B:778-792
6	PI3_4_KINASE_2	PS00916	Phosphatidylinositol 3- and 4-kinases signature 2.	PK3CD_MOUSE	877-897	1	- B:878-898

(no "Exon" information available for 4AJW)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:765
 aligned with PK3CD_MOUSE | O35904 from UniProtKB/Swiss-Prot  Length:1043

    Alignment length:916
                                   119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       669       679       689       699       709       719       729       739       749       759       769       779       789       799       809       819       829       839       849       859       869       879       889       899       909       919       929       939       949       959       969       979       989       999      1009      1019      
         PK3CD_MOUSE    110 KKLINSQISLLIGKGLHEFDSLRDPEVNDFRTKMRQFCEEAAAHRQQLGWVEWLQYSFPLQLEPSARGWRAGLLRVSNRALLVNVKFEGSEESFTFQVSTKDMPLALMACALRKKATVFRQPLVEQPEEYALQVNGRHEYLYGNYPLCHFQYICSCLHSGLTPHLTMVHSSSILAMRDEQSNPAPQVQKPRAKPPPIPAKKPSSVSLWSLEQPFSIELIEGRKVNADERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYAVVEKAKKARSTKKKSKKADCPIAWANLMLFDYKDQLKTGERCLYMWPSVPDEKGELLNPAGTVRGNPNTESAAALVIYLPEVAPHPVYFPALEKILELGRHGERGRITEEELQLREILERRGSGELYEHEKDLVWKMRHEVQEHFPEALARLLLVTKWNKHEDVAQMLYLLCSWPELPVLSALELLDFSFPDCYVGSFAIKSLRKLTDDELFQYLLQLVQVLKYESYLDCELTKFLLGRALANRKIGHFLFWHLRSEMHVPSVALRFGLIMEAYCRGSTHHMKVLMKQGEALSKLKALNDFVKVSSQKTTKPQTKEMMHMCMRQETYMEALSHLQSPLDPSTLLEEVCVEQCTFMDSKMKPLWIMYSSEEAGSAGNVGIIFKNGDDLRQDMLTLQMIQLMDVLWKQEGLDLRMTPYGCLPTGDRTGLIEVVLHSDTIANIQLNKSNMAATAAFNKDALLNWLKSKNPGEALDRAIEEFTLSCAGYCVATYVLGIGDRHSDNIMIRESGQLFHIDFGHFLGNFKTKFGINRERVPFILTYDFVHVIQQGKTNNSEKFERFRGYCERAYTILRRHGLLFLHLFALMRAAGLPELSCSKDIQYLKDSLALGKTEEEALKHFRVKFNEALRES 1025
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh..hhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh......------------...eeeeeeee.....eeeeeee...hhhhhhhhhhhhhhhh-------hhh.eeeee.....ee....hhhhhhhhhhhhhhh...eeeeeehhhhhhhhhhh..-----------------------------.....eeeeee....-------.eeeee.........--------------------...........eeeeeee.------------------..eeeeeeee...........eeeee.ee.-------..................eeeee.....--.....hhhhhh..-----------------------------.hhhhhhhhhhhhhhhhh..hhhhhhhhh...hhhhhhhhhhhhhh....hhhhhhhhh.....hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh.hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..ee.......ee.ee.....ee.......eeeeee..........eeeeee...hhhhhhhhhhhhhhhhhhhhh..........eee....eeeee....eeehhhhhh-------...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........eeee....eee........-------------....hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----------------------------------------------------------------------------PI3K_RBD  PDB: A:187-278 UniProt: 187-278                                                   ----------------------------------------PI3K_C2  PDB: A:321-476 UniProt: 319-476                                                                                                                      -------------------PIK_HELICAL  PDB: A:525-674 UniProt: 496-673                                                                                                                                      ---------------------------------------------------------------------------------------------------PI3_4_KINASE_3  PDB: A:774-1024 UniProt: 773-1023                                                                                                                                                                                                          -- PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PI3_4_KINASE_1 -------------------------------------------------------------------------------------PI3_4_KINASE_2       -------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4ajw A  110 KKLINSQISLLIGKGLHEFDSLRDPEVNDFRTKMRQFCEEAAAHRQQLGWVEWLQYSFPLQLEP------------SNRALLVNVKFEGSEESFTFQVSTKDMPLALMACALRKKATV-------QPEEYALQVNGRHEYLYGNYPLCHFQYICSCLHSGLTPHLTMVHSSSILAMRDEQSN-----------------------------QPFSIELIEGRKVNA-------VQAGLFHGNEMLCKT--------------------DISVCDLPRMARLCFALYA------------------DCPIAWANLMLFDYKDQLKTGERCLYMWPS-------LLNPAGTVRGNPNTESAAALVIYLPEVA--PVYFPALEKILEL-----------------------------EHEKDLVWKMRHEVQEHFPEALARLLLVTKWNKHEDVAQMLYLLCSWPELPVLSALELLDFSFPDCYVGSFAIKSLRKLTDDELFQYLLQLVQVLKYESYLDCELTKFLLGRALANRKIGHFLFWHLRSEMHVPSVALRFGLIMEAYCRGSTHHMKVLMKQGEALSKLKALNDFVKVSSQKTTKPQTKEMMHMCMRQETYMEALSHLQSPLDPSTLLEEVCVEQCTFMDSKMKPLWIMYSSEEAGSAGNVGIIFKNGDDLRQDMLTLQMIQLMDVLWKQEGLDLRMTPYGCLPTGDRTGLIEVVLHSDTIANIQL-------TAAFNKDALLNWLKSKNPGEALDRAIEEFTLSCAGYCVATYVLGIGDRHSDNIMIRESGQLFHIDFGHFLG-------------PFILTYDFVHVIQQGKTNNSEKFERFRGYCERAYTILRRHGLLFLHLFALMRAAGLPELSCSKDIQYLKDSLALGKTEEEALKHFRVKFNEALRES 1026
                                   119       129       139       149       159       169   |     -      |189       199       209       219       | -     | 239       249       259       269       279       289 |       -         -         - |     329     |   -   |   349       | -         -       379       389      |  -         -     | 419       429       439    |    -  |    459       469       479  |    489    |    -         -         -    |  530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830        |-      |850       860       870       880       890       900       910      |  -         -|      940       950       960       970       980       990      1000      1010      1020      
                                                                                         173          186                                      227     235                                                     291                           321           335     343           357                  378               396                415                          444     452                        479  |         494                           525                                                                                                                                                                                                                                                                                                                       839     847                                                                   917           931                                                                                               
                                                                                                                                                                                                                                                                                                                                                                                                              482

Chain B from PDB  Type:PROTEIN  Length:792
 aligned with PK3CD_MOUSE | O35904 from UniProtKB/Swiss-Prot  Length:1043

    Alignment length:915
                                   120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960       970       980       990      1000      1010      1020     
         PK3CD_MOUSE    111 KLINSQISLLIGKGLHEFDSLRDPEVNDFRTKMRQFCEEAAAHRQQLGWVEWLQYSFPLQLEPSARGWRAGLLRVSNRALLVNVKFEGSEESFTFQVSTKDMPLALMACALRKKATVFRQPLVEQPEEYALQVNGRHEYLYGNYPLCHFQYICSCLHSGLTPHLTMVHSSSILAMRDEQSNPAPQVQKPRAKPPPIPAKKPSSVSLWSLEQPFSIELIEGRKVNADERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYAVVEKAKKARSTKKKSKKADCPIAWANLMLFDYKDQLKTGERCLYMWPSVPDEKGELLNPAGTVRGNPNTESAAALVIYLPEVAPHPVYFPALEKILELGRHGERGRITEEELQLREILERRGSGELYEHEKDLVWKMRHEVQEHFPEALARLLLVTKWNKHEDVAQMLYLLCSWPELPVLSALELLDFSFPDCYVGSFAIKSLRKLTDDELFQYLLQLVQVLKYESYLDCELTKFLLGRALANRKIGHFLFWHLRSEMHVPSVALRFGLIMEAYCRGSTHHMKVLMKQGEALSKLKALNDFVKVSSQKTTKPQTKEMMHMCMRQETYMEALSHLQSPLDPSTLLEEVCVEQCTFMDSKMKPLWIMYSSEEAGSAGNVGIIFKNGDDLRQDMLTLQMIQLMDVLWKQEGLDLRMTPYGCLPTGDRTGLIEVVLHSDTIANIQLNKSNMAATAAFNKDALLNWLKSKNPGEALDRAIEEFTLSCAGYCVATYVLGIGDRHSDNIMIRESGQLFHIDFGHFLGNFKTKFGINRERVPFILTYDFVHVIQQGKTNNSEKFERFRGYCERAYTILRRHGLLFLHLFALMRAAGLPELSCSKDIQYLKDSLALGKTEEEALKHFRVKFNEALRES 1025
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh..hhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh........---------....eeeeeeee.....eeeeeee...hhhhhhhhhhhhhhhh-------hhh.eeeee.....ee....hhhhhhhhhhhhhhh...eeeeeehhhhhhhhhhh..----------------------------..eeeeeeeeee....---.eeeeeeeee.........ee...ee.....eeeeeeeeeee........eeeeeee.------------------..eeeeeeee...........eeeee.ee.-------..................eeeee.....--.....hhhhhh..-----------------------------.hhhhhhhhhhhhhhhhh..hhhhhhhhh...hhhhhhhhhhhhhh....hhhhhhhhh.....hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh.hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..ee.......ee.ee.hhhhee.......eeeeeee...eeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhh..........eeeee..eeeee....eeehhhhhh-------...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........eeee....eee........-------------....hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------------------------------------------------------------------------PI3K_RBD  PDB: B:187-278 UniProt: 187-278                                                   ----------------------------------------PI3K_C2  PDB: B:320-476 UniProt: 319-476                                                                                                                      -------------------PIK_HELICAL  PDB: B:525-674 UniProt: 496-673                                                                                                                                      ---------------------------------------------------------------------------------------------------PI3_4_KINASE_3  PDB: B:774-1024 UniProt: 773-1023                                                                                                                                                                                                          -- PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PI3_4_KINASE_1 -------------------------------------------------------------------------------------PI3_4_KINASE_2       -------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4ajw B  111 KLINSQISLLIGKGLHEFDSLRDPEVNDFRTKMRQFCEEAAAHRQQLGWVEWLQYSFPLQLEPSA---------VSNRALLVNVKFEGSEESFTFQVSTKDMPLALMACALRKKATV-------QPEEYALQVNGRHEYLYGNYPLCHFQYICSCLHSGLTPHLTMVHSSSILAMRDEQSN----------------------------EQPFSIELIEGRKVNA---MKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYA------------------DCPIAWANLMLFDYKDQLKTGERCLYMWPS-------LLNPAGTVRGNPNTESAAALVIYLPEVA--PVYFPALEKILEL-----------------------------EHEKDLVWKMRHEVQEHFPEALARLLLVTKWNKHEDVAQMLYLLCSWPELPVLSALELLDFSFPDCYVGSFAIKSLRKLTDDELFQYLLQLVQVLKYESYLDCELTKFLLGRALANRKIGHFLFWHLRSEMHVPSVALRFGLIMEAYCRGSTHHMKVLMKQGEALSKLKALNDFVKVSSQKTTKPQTKEMMHMCMRQETYMEALSHLQSPLDPSTLLEEVCVEQCTFMDSKMKPLWIMYSSEEAGSAGNVGIIFKNGDDLRQDMLTLQMIQLMDVLWKQEGLDLRMTPYGCLPTGDRTGLIEVVLHSDTIANIQL-------TAAFNKDALLNWLKSKNPGEALDRAIEEFTLSCAGYCVATYVLGIGDRHSDNIMIRESGQLFHIDFGHFLG-------------PFILTYDFVHVIQQGKTNNSEKFERFRGYCERAYTILRRHGLLFLHLFALMRAAGLPELSCSKDIQYLKDSLALGKTEEEALKHFRVKFNEALRES 1026
                                   120       130       140       150       160       170    |    -    |  190       200       210       220      |  -    |  240       250       260       270       280       290|        -         -       320       330    |  340       350       360       370       380       390     |   -         -    |  420       430       440   |     - |     460       470        |- |     490   |     -         -         -   |   531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       | -     | 851       861       871       881       891       901       911     |   -       931       941       951       961       971       981       991      1001      1011      1021     
                                                                                          175       185                                       227     235                                                     291                          320            335 339                                                      396                415                          444     452                        479  |         494                           525                                                                                                                                                                                                                                                                                                                       839     847                                                                   917           931                                                                                               
                                                                                                                                                                                                                                                                                                                                                                                                             482

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4AJW)

(no "CATH Domain" information available for 4AJW)

(no "Pfam Domain" information available for 4AJW)

Asymmetric Unit(hide GO term definitions)

Chain A,B (PK3CD_MOUSE | O35904)

molecular function
	GO:0016303	1-phosphatidylinositol-3-kinase activity	Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol + ATP = a 1-phosphatidyl-1D-myo-inositol 3-phosphate + ADP + 2 H(+).
	GO:0035005	1-phosphatidylinositol-4-phosphate 3-kinase activity	Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol 4-phosphate + ATP = 1-phosphatidyl-1D-myo-inositol 3,4-bisphosphate + ADP + 2 H(+).
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0016301	kinase activity	Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0046934	phosphatidylinositol-4,5-bisphosphate 3-kinase activity	Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate + ATP = a 1-phosphatidyl-1D-myo-inositol 3,4,5-trisphosphate + ADP + 2 H(+).
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0042113	B cell activation	The change in morphology and behavior of a mature or immature B cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific.
	GO:0001782	B cell homeostasis	The process of regulating the proliferation and elimination of B cells such that the total number of B cells within a whole or part of an organism is stable over time in the absence of an outside stimulus.
	GO:0002250	adaptive immune response	An immune response mediated by cells expressing specific receptors for antigen produced through a somatic diversification process, and allowing for an enhanced secondary response to subsequent exposures to the same antigen (immunological memory).
	GO:0030154	cell differentiation	The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state.
	GO:0007166	cell surface receptor signaling pathway	A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription.
	GO:0006935	chemotaxis	The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis).
	GO:0050832	defense response to fungus	Reactions triggered in response to the presence of a fungus that act to protect the cell or organism.
	GO:0048872	homeostasis of number of cells	Any biological process involved in the maintenance of the steady-state number of cells within a population of cells.
	GO:0002376	immune system process	Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats.
	GO:0006954	inflammatory response	The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages.
	GO:0045087	innate immune response	Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
	GO:0046854	phosphatidylinositol phosphorylation	The process of introducing one or more phosphate groups into a phosphatidylinositol, any glycerophosphoinositol having one phosphatidyl group esterified to one of the hydroxy groups of inositol.
	GO:0036092	phosphatidylinositol-3-phosphate biosynthetic process	The chemical reactions and pathways resulting in the formation of phosphatidylinositol-3-phosphate, a phosphatidylinositol monophosphate carrying the phosphate group at the 3-position.
	GO:0048015	phosphatidylinositol-mediated signaling	A series of molecular signals in which a cell uses a phosphatidylinositol-mediated signaling to convert a signal into a response. Phosphatidylinositols include phosphatidylinositol (PtdIns) and its phosphorylated derivatives.
	GO:0016310	phosphorylation	The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
	GO:0030335	positive regulation of cell migration	Any process that activates or increases the frequency, rate or extent of cell migration.
	GO:0010628	positive regulation of gene expression	Any process that increases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005942	phosphatidylinositol 3-kinase complex	A protein complex capable of phosphatidylinositol 3-kinase activity and containing subunits of any phosphatidylinositol 3-kinase (PI3K) enzyme. These complexes are divided in three classes (called I, II and III) that differ for their presence across taxonomic groups and for the type of their constituents. Catalytic subunits of phosphatidylinositol 3-kinase enzymes are present in all 3 classes; regulatory subunits of phosphatidylinositol 3-kinase enzymes are present in classes I and III; adaptor proteins have been observed in class II complexes and may be present in other classes too.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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2wxe	THE CRYSTAL STRUCTURE OF THE MURINE CLASS IA PI 3- KINASE P110DELTA IN COMPLEX WITH IC87114.
2wxf	THE CRYSTAL STRUCTURE OF THE MURINE CLASS IA PI 3- KINASE P110DELTA IN COMPLEX WITH PIK-39.
2wxg	THE CRYSTAL STRUCTURE OF THE MURINE CLASS IA PI 3- KINASE P110DELTA IN COMPLEX WITH SW13.
2wxh	THE CRYSTAL STRUCTURE OF THE MURINE CLASS IA PI 3- KINASE P110DELTA IN COMPLEX WITH SW14.
2wxi	THE CRYSTAL STRUCTURE OF THE MURINE CLASS IA PI 3- KINASE P110DELTA IN COMPLEX WITH SW30.
2wxj	THE CRYSTAL STRUCTURE OF THE MURINE CLASS IA PI 3- KINASE P110DELTA IN COMPLEX WITH INK654.
2wxk	THE CRYSTAL STRUCTURE OF THE MURINE CLASS IA PI 3- KINASE P110DELTA IN COMPLEX WITH INK666.
2wxl	THE CRYSTAL STRUCTURE OF THE MURINE CLASS IA PI 3- KINASE P110DELTA IN COMPLEX WITH ZSTK474.
2wxm	THE CRYSTAL STRUCTURE OF THE MURINE CLASS IA PI 3- KINASE P110DELTA IN COMPLEX WITH DL06.
2wxn	THE CRYSTAL STRUCTURE OF THE MURINE CLASS IA PI 3- KINASE P110DELTA IN COMPLEX WITH DL07.
2wxo	THE CRYSTAL STRUCTURE OF THE MURINE CLASS IA PI 3- KINASE P110DELTA IN COMPLEX WITH AS5.
2wxp	THE CRYSTAL STRUCTURE OF THE MURINE CLASS IA PI 3- KINASE P110DELTA IN COMPLEX WITH GDC-0941.
2wxq	THE CRYSTAL STRUCTURE OF THE MURINE CLASS IA PI 3- KINASE P110DELTA IN COMPLEX WITH AS15.
2wxr	THE CRYSTAL STRUCTURE OF THE MURINE CLASS IA PI 3- KINASE P110DELTA.
2x38	THE CRYSTAL STRUCTURE OF THE MURINE CLASS IA PI 3- KINASE P110DELTA IN COMPLEX WITH IC87114.

Description

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Ligands, Modified Residues, Ions (1, 2)

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Cis Peptide Bonds (2, 2)

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Gene Ontology (28, 28)

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