Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)

(-) Description

Title :  ETHER LIPID-GENERATING ENZYME AGPS IN COMPLEX WITH INHIBITOR ZINC69435460
 
Authors :  V. Piano, D. I. Benjamin, S. Valente, S. Nenci, B. Marrocco, A. Mai, A. Al D. K. Nomura, A. Mattevi
Date :  25 Aug 15  (Deposition) - 09 Sep 15  (Release) - 02 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Transferase, Ether Phospholipid, Cancer, Flavin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Piano, D. I. Benjamin, S. Valente, S. Nenci, B. Marrocco, A. Mai, A. Aliverti, D. K. Nomura, A. Mattevi
Discovery Of Inhibitors For The Ether Lipid-Generating Enzyme Agps As Anti-Cancer Agents.
Acs Chem. Biol. V. 10 2589 2015
PubMed-ID: 26322624  |  Reference-DOI: 10.1021/ACSCHEMBIO.5B00466

(-) Compounds

Molecule 1 - ALKYLDIHYDROXYACETONEPHOSPHATE SYNTHASE, PEROXISOMAL
    Chains: A, B, C, D
    EC Number: 2.5.1.26
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector: PET-SUMO
    Expression System Vector Type: PLASMID
    Organism Common: DOMESTIC GUINEA PIG
    Organism Scientific: CAVIA PORCELLUS
    Organism Taxid: 10141
    Synonym: ALKYL-DHAP SYNTHASE, ALKYLGLYCERONE-PHOSPHATE SYNTHASE, ALKYL-DIHYDROXYACETONEPHOSPHATE SYNTHASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 12)

Asymmetric Unit (3, 12)
No.NameCountTypeFull Name
1B2Z4Ligand/Ion(3-(2-FLUOROPHENYL)-N-(1-(2-OXO-2,3-DIHYDRO-1H-BENZO[D]IMIDAZOL-5-YL)ETHYL)BUTANAMIDE)
2FAD4Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
3SO44Ligand/IonSULFATE ION
Biological Unit 1 (3, 6)
No.NameCountTypeFull Name
1B2Z2Ligand/Ion(3-(2-FLUOROPHENYL)-N-(1-(2-OXO-2,3-DIHYDRO-1H-BENZO[D]IMIDAZOL-5-YL)ETHYL)BUTANAMIDE)
2FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
3SO42Ligand/IonSULFATE ION
Biological Unit 2 (3, 6)
No.NameCountTypeFull Name
1B2Z2Ligand/Ion(3-(2-FLUOROPHENYL)-N-(1-(2-OXO-2,3-DIHYDRO-1H-BENZO[D]IMIDAZOL-5-YL)ETHYL)BUTANAMIDE)
2FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
3SO42Ligand/IonSULFATE ION

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:303 , ILE A:511 , MET A:514 , ARG A:515 , GLY A:525 , GLU A:526 , SER A:527 , TYR A:578 , PHE A:581 , HIS A:616 , HIS A:617 , FAD A:999BINDING SITE FOR RESIDUE B2Z A 888
02AC2SOFTWAREHIS A:189 , PRO A:234 , ILE A:235 , GLY A:236 , GLY A:237 , GLY A:238 , THR A:239 , SER A:240 , GLY A:244 , LEU A:245 , PRO A:302 , ASP A:303 , SER A:304 , SER A:308 , THR A:309 , GLY A:311 , GLY A:312 , TRP A:313 , SER A:315 , THR A:316 , ALA A:318 , SER A:319 , GLU A:368 , GLY A:369 , GLY A:372 , VAL A:373 , ILE A:374 , ALA A:512 , HIS A:616 , ASN A:654 , ASN A:656 , B2Z A:888 , HOH A:2049 , HOH A:2067 , HOH A:2074 , HOH A:2096BINDING SITE FOR RESIDUE FAD A 999
03AC3SOFTWARELYS A:323 , TYR A:571 , ASP A:572BINDING SITE FOR RESIDUE SO4 A1659
04AC4SOFTWAREHIS B:189 , ASP B:303 , ILE B:511 , ARG B:515 , GLY B:525 , GLU B:526 , SER B:527 , TYR B:578 , PHE B:581 , ALA B:582 , HIS B:616 , HIS B:617 , FAD B:999 , HOH B:2095BINDING SITE FOR RESIDUE B2Z B 888
05AC5SOFTWARETRP B:96 , PRO B:234 , ILE B:235 , GLY B:236 , GLY B:237 , GLY B:238 , THR B:239 , SER B:240 , GLY B:244 , PRO B:302 , ASP B:303 , SER B:304 , SER B:308 , THR B:309 , GLY B:312 , TRP B:313 , SER B:315 , THR B:316 , ALA B:318 , SER B:319 , GLU B:368 , GLY B:369 , GLY B:372 , VAL B:373 , ILE B:374 , ALA B:512 , HIS B:616 , ASN B:654 , ASN B:656 , B2Z B:888 , HOH B:2049 , HOH B:2054 , HOH B:2066 , HOH B:2067BINDING SITE FOR RESIDUE FAD B 999
06AC6SOFTWAREVAL B:219 , ASN B:223 , VAL B:339 , THR B:340 , GLY B:343BINDING SITE FOR RESIDUE SO4 B1659
07AC7SOFTWAREHIS C:189 , ASP C:303 , ILE C:511 , ARG C:515 , GLY C:525 , GLU C:526 , SER C:527 , TYR C:578 , PHE C:581 , ALA C:582 , HIS C:616 , HIS C:617 , FAD C:999 , HOH C:2139BINDING SITE FOR RESIDUE B2Z C 888
08AC8SOFTWARETRP C:96 , PRO C:234 , ILE C:235 , GLY C:236 , GLY C:237 , GLY C:238 , THR C:239 , SER C:240 , GLY C:244 , LEU C:245 , PRO C:302 , ASP C:303 , SER C:304 , SER C:308 , THR C:309 , GLY C:312 , TRP C:313 , SER C:315 , THR C:316 , ALA C:318 , SER C:319 , GLU C:368 , GLY C:369 , GLY C:372 , VAL C:373 , ILE C:374 , ALA C:512 , HIS C:616 , ASN C:656 , B2Z C:888 , HOH C:2067 , HOH C:2070 , HOH C:2074 , HOH C:2090 , HOH C:2097BINDING SITE FOR RESIDUE FAD C 999
09AC9SOFTWAREILE C:325 , PRO C:415 , ALA C:416 , PHE C:470 , GLU C:471 , HIS C:480BINDING SITE FOR RESIDUE SO4 C1659
10BC1SOFTWAREASP D:303 , ILE D:511 , ARG D:515 , GLU D:526 , SER D:527 , TYR D:578 , TYR D:580 , PHE D:581 , HIS D:616 , HIS D:617 , FAD D:999BINDING SITE FOR RESIDUE B2Z D 888
11BC2SOFTWAREHIS D:189 , PRO D:234 , ILE D:235 , GLY D:236 , GLY D:237 , GLY D:238 , THR D:239 , SER D:240 , GLY D:244 , LEU D:245 , PRO D:302 , ASP D:303 , SER D:304 , SER D:308 , THR D:309 , GLY D:312 , TRP D:313 , SER D:315 , THR D:316 , ALA D:318 , SER D:319 , GLU D:368 , GLY D:369 , GLY D:372 , VAL D:373 , ILE D:374 , ALA D:512 , HIS D:616 , ASN D:656 , B2Z D:888 , HOH D:2043 , HOH D:2046 , HOH D:2060 , HOH D:2061BINDING SITE FOR RESIDUE FAD D 999
12BC3SOFTWAREPRO D:415 , ALA D:416 , PHE D:470 , GLU D:471 , HIS D:480BINDING SITE FOR RESIDUE SO4 D1659

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5AE1)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5AE1)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5AE1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5AE1)

(-) Exons   (0, 0)

(no "Exon" information available for 5AE1)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:560
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhh............eee.....eee.............hhhhhhhhhhh........hhhhhhhhhhh..eee.hhhhhhhh....hhhhhhhhhh........eeee..hhhhhhhhhhhhhhhh.eeeee...................eeeee......eeeee....eeeee...hhhhhhhhhhhh.ee...........hhhhhhhhh....hhhhhhhhhhheeeeeeee..eeee.............hhhhhh.......eeeeeeee.ee...eeeeeeeee.hhhhhhhhhhhhhhh.....eeeeehhhhhhhhhh..........hhhhhhhhhh.........eeeeeeeeehhhhhhhhhhhhhhhhhh...ee.hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeeee..hhhhhhhhhhhhhhhhhhhh......eeeeeeeeee..eeeeeeeeeee.....hhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ae1 A  81 GIIPKKRQELMKWNGWGYNDSKFFLNKKGQLELTGKRYPLSGVALPTFKDWIQNTFGINLPPSIVNEDFLHELKKTNISYSQEADDRVFRAHGHCLHEIFLLREGMFERIPDIVLWPTCHDDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQMNRILWVDENNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFSTVGGWISTRASGMKKNIYGNIEDLVVHMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIAKQRCAPASIRLMDNQQFQFGHALKPQVSSIFTSFLDGLKKFYIKGFDPNQLSVATLLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFETSAPWDRVVDLCRNVKERIRRECKEKGVQFPPLSTCRVTQTYDAGACIYFYFAFNYRGISDPLAVFEQTEAAAREEILANGGSLSHHHGVGKLRKQWLKESISDVGFGMLKSVKDYVDPTNIFGNRNLL 658
                                    90       100       110       120       130       140|      165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445      |458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658
                                                                                     140|                                                                                                                                                                                                                                                                                                     452|                                                                                                                                                                                                          
                                                                                      156                                                                                                                                                                                                                                                                                                      456                                                                                                                                                                                                          


Chain B from PDB  Type:PROTEIN  Length:539
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhh............eee.....eee.............hhhhhhhhhhh.........hhhhhhhhhhh..eee.hhhhhhhh....hhhhhhhhhhh.......eeee..hhhhhhhhhhhhhhhh.eeeee...................eeeee......eeeee....eeeee...hhhhhhhhhhhh.ee...........hhhhhhhhh....hhhhhhhhhhheeeeeeee..eee..............hhhhhh.......eeeeeeee.ee...eeeeeeeee.hhhhhhhhhhhhhhh.....eeeeehhhhhhhhhhh......eeeeeeeeehhhhhhhhhhhhhhhhhh...ee.hhhhhhhhhhhh.hhhhhhhhhhh..eeeeeeeeeee..hhhhhhhhhhhhhhhhhhh.......eeeeeeeeee..eeeeeeeeeee.....hhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ae1 B  81 GIIPKKRQELMKWNGWGYNDSKFFLNKKGQLELTGKRYPLSGVALPTFKDWIQNTFGINLTPPSIVNEDFLHELKKTNISYSQEADDRVFRAHGHCLHEIFLLREGMFERIPDIVLWPTCHDDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQMNRILWVDENNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFSTVGGWISTRASGMKKNIYGNIEDLVVHMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIAKQRCAPASIRLMDNQQFQFGHALKPPNQLSVATLLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFETSAPWDRVVDLCRNVKERIRRECKEKGVQFPPLSTCRVTQTYDAGACIYFYFAFNYRGISDPLAVFEQTEAAAREEILANGGSLSHHHGVGKLRKQWLKESISDVGFGMLKSVKDYVDPTNIFGNRNLL 658
                                    90       100       110       120       130       140|      164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434|      469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649         
                                                                                     140|                                                                                                                                                                                                                                                                                    434|                                                                                                                                                                                                      
                                                                                      155                                                                                                                                                                                                                                                                                     460                                                                                                                                                                                                      


Chain C from PDB  Type:PROTEIN  Length:559
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhh............eee.....eee.............hhhhhhhhhhh.............hhhhh.....hhhhhhhhhhhh.eee.hhhhhhhh....hhhhhhhhhhh.......eeee..hhhhhhhhhhhhhhh..eeeee...................eeeee......eeeee....eeeee...hhhhhhhhhhh..ee...........hhhhhhhhh....hhhhhhhhhhheeeeeeee..eee..............hhhhhh.......eeeeeeee.ee...eeeeeeeee.hhhhhhhhhhhhhhh.....eeeeehhhhhhhhhhh............eeeeeeeeehhhhhhhhhhhhhhhhhh...ee.hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeeehhhhhhhhhhhhhhhhhhhhhhh......eeeeeeeeee..eeeeeeeeeee.....hhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ae1 C  81 GIIPKKRQELMKWNGWGYNDSKFFLNKKGQLELTGKRYPLSGVALPTFKDWIQNTFGINLDHKTTSKASLNPSDTPPSIVNEDFLHELKKTNISYSQEADDRVFRAHGHCLHEIFLLREGMFERIPDIVLWPTCHDDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQMNRILWVDENNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFSTVGGWISTRASGMKKNIYGNIEDLVVHMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIAKQRCAPASIRLMDNQQFQFGHALKPKFKGFDPNQLSVATLLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFETSAPWDRVVDLCRNVKERIRRECKEKGVQFPPLSTCRVTQTYDAGACIYFYFAFNYRGISDPLAVFEQTEAAAREEILANGGSLSHHHGVGKLRKQWLKESISDVGFGMLKSVKDYVDPTNIFGNRNLL 658
                                    90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430   ||  459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649         
                                                                                                                                                                                                                                                                                                                                                                                           434|                                                                                                                                                                                                            
                                                                                                                                                                                                                                                                                                                                                                                            454                                                                                                                                                                                                            


Chain D from PDB  Type:PROTEIN  Length:564
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhh............eee.....eee.............hhhhhhhhhhh.............hhhhh.....hhhhhhhhhhh..eee.hhhhhhhh....hhhhhhhhhhh.......eeee..hhhhhhhhhhhhhhhh.eeeee...................eeeee......eeeee....eeeee...hhhhhhhhhhhh.ee...........hhhhhhhhh....hhhhhhhhhhheeeeeeee..eee..............hhhhhh.......eeeeeeee.ee...eeeeeeeee.hhhhhhhhhhhhhhh.....eeeeehhhhhhhhhh....hhhhhhh.......eeeeeeeeehhhhhhhhhhhhhhhhhhh..ee.hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeeee..hhhhhhhhhhhhhhhhhhhh......eeeeeeeeee..eeeeeeeeeee.....hhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5ae1 D  81 GIIPKKRQELMKWNGWGYNDSKFFLNKKGQLELTGKRYPLSGVALPTFKDWIQNTFGINLDHKTTSKASLNPSDTPPSIVNEDFLHELKKTNISYSQEADDRVFRAHGHCLHEIFLLREGMFERIPDIVLWPTCHDDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQMNRILWVDENNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFSTVGGWISTRASGMKKNIYGNIEDLVVHMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIAKQRCAPASIRLMDNQQFQFGHALKPQKKFYITKFKDPNQLSVATLLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFETSAPWDRVVDLCRNVKERIRRECKEKGVQFPPLSTCRVTQTYDAGACIYFYFAFNYRGISDPLAVFEQTEAAAREEILANGGSLSHHHGVGKLRKQWLKESISDVGFGMLKSVKDYVDPTNIFGNRNLL 658
                                    90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430    || 452   ||  464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654    
                                                                                                                                                                                                                                                                                                                                                                                            435|     456|                                                                                                                                                                                                       
                                                                                                                                                                                                                                                                                                                                                                                             448      459
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5AE1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5AE1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5AE1)

(-) Gene Ontology  (17, 17)

Asymmetric Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    B2Z  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    FAD  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    SO4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 5ae1)
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  5ae1
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  ADAS_CAVPO | P97275
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  2.5.1.26
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  ADAS_CAVPO | P97275
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ADAS_CAVPO | P97275: 4bby 4bc7 4bc9 4bca 5adz 5ae2 5ae3

(-) Related Entries Specified in the PDB File

5adz ETHER LIPID-GENERATING ENZYME AGPS IN COMPLEX WITH INHIBITOR 1A
5ae2 ETHER LIPID-GENERATING ENZYME AGPS IN COMPLEX WITH INHIBITOR 1E
5ae3 ETHER LIPID-GENERATING ENZYME AGPS IN COMPLEX WITH ANTIMYCIN A