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(-) Description

Title :  MAMMALIAN ALKYLDIHYDROXYACETONEPHOSPHATE SYNTHASE: ARG419HIS MUTANT
 
Authors :  S. Nenci, V. Piano, S. Rosati, A. Aliverti, V. Pandini, M. W. Fraaije, A. D. E. Edmondson, A. Mattevi
Date :  01 Oct 12  (Deposition) - 07 Nov 12  (Release) - 28 Nov 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Transferase, Plasmalogen, Flavin, Peroxisome (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Nenci, V. Piano, S. Rosati, A. Aliverti, V. Pandini, M. W. Fraaije, A. J. R. Heck, D. E. Edmondson, A. Mattevi
Precursor Of Ether Phospholipids Is Synthesized By A Flavoenzyme Through Covalent Catalysis.
Proc. Natl. Acad. Sci. Usa V. 109 18791 2012
PubMed-ID: 23112191  |  Reference-DOI: 10.1073/PNAS.1215128109

(-) Compounds

Molecule 1 - ALKYLDIHYDROXYACETONEPHOSPHATE SYNTHASE, PEROXISOMAL
    Chains: A, B, C, D
    EC Number: 2.5.1.26
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector: PETSUMO
    Expression System Vector Type: PLASMID
    Mutation: YES
    Organism Common: GUINEA PIG
    Organism Scientific: CAVIA PORCELLUS
    Organism Taxid: 10141
    Synonym: ALKYL-DHAP SYNTHASE, ALKYLGLYCERONE-PHOSPHATE SYNTHASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 8)

Asymmetric Unit (3, 8)
No.NameCountTypeFull Name
11DO2Ligand/Ion1-DODECANOL
2FAD4Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
3SO42Ligand/IonSULFATE ION
Biological Unit 1 (3, 4)
No.NameCountTypeFull Name
11DO1Ligand/Ion1-DODECANOL
2FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
3SO41Ligand/IonSULFATE ION
Biological Unit 2 (3, 4)
No.NameCountTypeFull Name
11DO1Ligand/Ion1-DODECANOL
2FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
3SO41Ligand/IonSULFATE ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:96 , PRO A:234 , ILE A:235 , GLY A:236 , GLY A:237 , GLY A:238 , THR A:239 , SER A:240 , VAL A:241 , GLY A:244 , LEU A:245 , PRO A:302 , ASP A:303 , SER A:304 , SER A:308 , THR A:309 , GLY A:311 , GLY A:312 , TRP A:313 , SER A:315 , THR A:316 , ALA A:318 , SER A:319 , GLU A:368 , GLY A:369 , GLY A:372 , VAL A:373 , ILE A:374 , ALA A:512 , HIS A:616 , ASN A:656 , HOH A:2008 , HOH A:2011 , HOH A:2017 , HOH A:2030BINDING SITE FOR RESIDUE FAD A 999
2AC2SOFTWARELYS A:323 , TYR A:571 , ASP A:572 , HOH A:2042 , LYS B:380BINDING SITE FOR RESIDUE SO4 A1659
3AC3SOFTWAREARG B:515 , GLY B:525 , SER B:527 , TYR B:578BINDING SITE FOR RESIDUE 1DO B 888
4AC4SOFTWARETRP B:96 , PRO B:234 , ILE B:235 , GLY B:236 , GLY B:237 , GLY B:238 , THR B:239 , SER B:240 , VAL B:241 , GLY B:244 , LEU B:245 , PRO B:302 , ASP B:303 , SER B:304 , SER B:308 , THR B:309 , GLY B:311 , GLY B:312 , TRP B:313 , SER B:315 , THR B:316 , ALA B:318 , SER B:319 , GLU B:368 , GLY B:369 , GLY B:372 , VAL B:373 , ILE B:374 , ALA B:512 , HIS B:616 , ASN B:654 , ASN B:656 , HOH B:2013 , HOH B:2015BINDING SITE FOR RESIDUE FAD B 999
5AC5SOFTWARETRP C:96 , PRO C:234 , ILE C:235 , GLY C:236 , GLY C:237 , GLY C:238 , THR C:239 , SER C:240 , GLY C:244 , LEU C:245 , PRO C:302 , ASP C:303 , SER C:304 , SER C:308 , THR C:309 , GLY C:311 , GLY C:312 , TRP C:313 , SER C:315 , THR C:316 , ALA C:318 , SER C:319 , GLU C:368 , GLY C:372 , VAL C:373 , ILE C:374 , ALA C:512 , HIS C:616 , ASN C:654 , ASN C:656 , HOH C:2015 , HOH C:2018 , HOH C:2022 , HOH C:2026BINDING SITE FOR RESIDUE FAD C 999
6AC6SOFTWAREILE C:511 , GLU C:526 , SER C:527 , TYR C:580BINDING SITE FOR RESIDUE 1DO C 888
7AC7SOFTWARETRP D:96 , PRO D:234 , ILE D:235 , GLY D:236 , GLY D:237 , GLY D:238 , THR D:239 , SER D:240 , VAL D:241 , GLY D:244 , LEU D:245 , PRO D:302 , ASP D:303 , SER D:304 , SER D:308 , THR D:309 , GLY D:311 , GLY D:312 , TRP D:313 , SER D:315 , THR D:316 , ALA D:318 , SER D:319 , GLU D:368 , GLY D:369 , GLY D:372 , VAL D:373 , ILE D:374 , ALA D:512 , HIS D:616 , ASN D:654 , ASN D:656BINDING SITE FOR RESIDUE FAD D 999
8AC8SOFTWARELYS C:380 , LYS D:323 , TYR D:571 , ASP D:572BINDING SITE FOR RESIDUE SO4 D1659

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4BC7)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4BC7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4BC7)

(-) PROSITE Motifs  (1, 4)

Asymmetric Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FAD_PCMHPS51387 PCMH-type FAD-binding domain profile.ADAS_CAVPO202-384
 
 
 		  4A:202-384
B:202-384
C:202-384
D:202-384
Biological Unit 1 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FAD_PCMHPS51387 PCMH-type FAD-binding domain profile.ADAS_CAVPO202-384
 
 
 		  2A:202-384
B:202-384
-
-
Biological Unit 2 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FAD_PCMHPS51387 PCMH-type FAD-binding domain profile.ADAS_CAVPO202-384
 
 
 		  2-
-
C:202-384
D:202-384

(-) Exons   (0, 0)

(no "Exon" information available for 4BC7)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:555
 aligned with ADAS_CAVPO | P97275 from UniProtKB/Swiss-Prot  Length:658

    Alignment length:578
                                    90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650        
           ADAS_CAVPO    81 GIIPKKRQELMKWNGWGYNDSKFFLNKKGQLELTGKRYPLSGVALPTFKDWIQNTFGINLDHKTTSKASLNPSDTPPSIVNEDFLHELKKTNISYSQEADDRVFRAHGHCLHEIFLLREGMFERIPDIVLWPTCHDDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQMNRILWVDENNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFSTVGGWISTRASGMKKNIYGNIEDLVVHMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIAKQRCAPASIRLMDNQQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLSVATLLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFETSAPWDRVVDLCRNVKERIRRECKEKGVQFPPLSTCRVTQTYDAGACIYFYFAFNYRGISDPLAVFEQTEAAAREEILANGGSLSHHHGVGKLRKQWLKESISDVGFGMLKSVKDYVDPTNIFGNRNLL 658
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhh............eee.....eee.............hhhhhhhhhhh.......---------.......hhhhhhhhhhhh.eee.hhhhhhhh....hhhhhhhhhhh.......eeee..hhhhhhhhhhhhhhh..eeeee...................eeeee......eeeee....eeeee...hhhhhhhhhhh..ee...........hhhhhhhhh....hhhhhhhhhhheeeeeeee..eeee............hhhhhhh.......eeeeeeee.ee...eeeeeeeee.hhhhhhhhhhhhhhh.....eeeeehhhhhhhhhh...........--------------.......eeeeeeeeehhhhhhhhhhhhhhhhhh...ee.hhhhhhhhhhhh.hhhhhhhhhhhh.eeeeeeeeeee..hhhhhhhhhhhhhhhhhhhh......eeeeeeeee...eeeeeeeeeee.....hhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------FAD_PCMH  PDB: A:202-384 UniProt: 202-384                                                                                                                                              ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4bc7 A  81 GIIPKKRQELMKWNGWGYNDSKFFLNKKGQLELTGKRYPLSGVALPTFKDWIQNTFGINLDHKT---------DTPPSIVNEDFLHELKKTNISYSQEADDRVFRAHGHCLHEIFLLREGMFERIPDIVLWPTCHDDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQMNRILWVDENNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFSTVGGWISTRASGMKKNIYGNIEDLVVHMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIAKQRCAPASIHLMDNQQFQFGHALKPQVSSIFTS--------------GFDPNQLSVATLLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFETSAPWDRVVDLCRNVKERIRRECKEKGVQFPPLSTCRVTQTYDAGACIYFYFAFNYRGISDPLAVFEQTEAAAREEILANGGSLSHHHGVGKLRKQWLKESISDVGFGMLKSVKDYVDPTNIFGNRNLL 658
                                    90       100       110       120       130       140   |     -   |   160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440 |       -      |460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650        
                                                                                         144       154                                                                                                                                                                                                                                                                                             442            457                                                                                                                                                                                                         


Chain B from PDB  Type:PROTEIN  Length:543
 aligned with ADAS_CAVPO | P97275 from UniProtKB/Swiss-Prot  Length:658

    Alignment length:578
                                    90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650        
           ADAS_CAVPO    81 GIIPKKRQELMKWNGWGYNDSKFFLNKKGQLELTGKRYPLSGVALPTFKDWIQNTFGINLDHKTTSKASLNPSDTPPSIVNEDFLHELKKTNISYSQEADDRVFRAHGHCLHEIFLLREGMFERIPDIVLWPTCHDDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQMNRILWVDENNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFSTVGGWISTRASGMKKNIYGNIEDLVVHMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIAKQRCAPASIRLMDNQQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLSVATLLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFETSAPWDRVVDLCRNVKERIRRECKEKGVQFPPLSTCRVTQTYDAGACIYFYFAFNYRGISDPLAVFEQTEAAAREEILANGGSLSHHHGVGKLRKQWLKESISDVGFGMLKSVKDYVDPTNIFGNRNLL 658
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhh............eee.....eee..........ee.hhhhhhhhhhh...--------------......hhhhhhhhhhhh.eee.hhhhhhhh....hhhhhhhhhhh.......eeee..hhhhhhhhhhhhhhhh.eeeee...................eeeee......eeeee....eeeee...hhhhhhhhhhh..ee...........hhhhhhhhh....hhhhhhhhhhheeeeeeee..eee.............hhhhhhh.......eeeeeeee.ee...eeeeeeeee.hhhhhhhhhhhhhhh.....eeeeehhhhhhhhhh....---------------------.......eeeeeeeeehhhhhhhhhhhhhhhhhhh..ee.hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeeee..hhhhhhhhhhhhhhhhhhhh......eeeeeeeeee..eeeeeeeeeee.....hhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------FAD_PCMH  PDB: B:202-384 UniProt: 202-384                                                                                                                                              ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4bc7 B  81 GIIPKKRQELMKWNGWGYNDSKFFLNKKGQLELTGKRYPLSGVALPTFKDWIQNTFGINL--------------TPPSIVNEDFLHELKKTNISYSQEADDRVFRAHGHCLHEIFLLREGMFERIPDIVLWPTCHDDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQMNRILWVDENNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFSTVGGWISTRASGMKKNIYGNIEDLVVHMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIAKQRCAPASIHLMDNQQFQFGHALKPQ---------------------GFDPNQLSVATLLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFETSAPWDRVVDLCRNVKERIRRECKEKGVQFPPLSTCRVTQTYDAGACIYFYFAFNYRGISDPLAVFEQTEAAAREEILANGGSLSHHHGVGKLRKQWLKESISDVGFGMLKSVKDYVDPTNIFGNRNLL 658
                                    90       100       110       120       130       140         -    |  160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430    |    -         -      |460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650        
                                                                                     140            155                                                                                                                                                                                                                                                                                     435                   457                                                                                                                                                                                                         


Chain C from PDB  Type:PROTEIN  Length:557
 aligned with ADAS_CAVPO | P97275 from UniProtKB/Swiss-Prot  Length:658

    Alignment length:578
                                    90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650        
           ADAS_CAVPO    81 GIIPKKRQELMKWNGWGYNDSKFFLNKKGQLELTGKRYPLSGVALPTFKDWIQNTFGINLDHKTTSKASLNPSDTPPSIVNEDFLHELKKTNISYSQEADDRVFRAHGHCLHEIFLLREGMFERIPDIVLWPTCHDDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQMNRILWVDENNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFSTVGGWISTRASGMKKNIYGNIEDLVVHMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIAKQRCAPASIRLMDNQQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLSVATLLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFETSAPWDRVVDLCRNVKERIRRECKEKGVQFPPLSTCRVTQTYDAGACIYFYFAFNYRGISDPLAVFEQTEAAAREEILANGGSLSHHHGVGKLRKQWLKESISDVGFGMLKSVKDYVDPTNIFGNRNLL 658
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhh............eee.....eee.............hhhhhhhhhhh.............hhhhh.....hhhhhhhhhhhh.eee.hhhhhhhh....hhhhhhhhhhh.......eeee..hhhhhhhhhhhhhhhh.eeeee...................eeeee......eeeee....eeeee...hhhhhhhhhhh..ee...........hhhhhhhh.....hhhhhhhhhhheeeeeeee..eeee.............hhhhhh.......eeeeeeee.ee...eeeeeeeee.hhhhhhhhhhhhhhh.....eeeeehhhhhhhhhh....---------------------.......eeeeeeeeehhhhhhhhhhhhhhhhhhh..ee.hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeeee..hhhhhhhhhhhhhhhhhhhh......eeeeeeeee...eeeeeeeeeee.....hhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------FAD_PCMH  PDB: C:202-384 UniProt: 202-384                                                                                                                                              ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4bc7 C  81 GIIPKKRQELMKWNGWGYNDSKFFLNKKGQLELTGKRYPLSGVALPTFKDWIQNTFGINLDHKTTSKASLNPSDTPPSIVNEDFLHELKKTNISYSQEADDRVFRAHGHCLHEIFLLREGMFERIPDIVLWPTCHDDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQMNRILWVDENNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFSTVGGWISTRASGMKKNIYGNIEDLVVHMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIAKQRCAPASIHLMDNQQFQFGHALKPQ---------------------GFDPNQLSVATLLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFETSAPWDRVVDLCRNVKERIRRECKEKGVQFPPLSTCRVTQTYDAGACIYFYFAFNYRGISDPLAVFEQTEAAAREEILANGGSLSHHHGVGKLRKQWLKESISDVGFGMLKSVKDYVDPTNIFGNRNLL 658
                                    90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430    |    -         -      |460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650        
                                                                                                                                                                                                                                                                                                                                                                                            435                   457                                                                                                                                                                                                         


Chain D from PDB  Type:PROTEIN  Length:550
 aligned with ADAS_CAVPO | P97275 from UniProtKB/Swiss-Prot  Length:658

    Alignment length:578
                                    90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650        
           ADAS_CAVPO    81 GIIPKKRQELMKWNGWGYNDSKFFLNKKGQLELTGKRYPLSGVALPTFKDWIQNTFGINLDHKTTSKASLNPSDTPPSIVNEDFLHELKKTNISYSQEADDRVFRAHGHCLHEIFLLREGMFERIPDIVLWPTCHDDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQMNRILWVDENNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFSTVGGWISTRASGMKKNIYGNIEDLVVHMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIAKQRCAPASIRLMDNQQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLSVATLLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFETSAPWDRVVDLCRNVKERIRRECKEKGVQFPPLSTCRVTQTYDAGACIYFYFAFNYRGISDPLAVFEQTEAAAREEILANGGSLSHHHGVGKLRKQWLKESISDVGFGMLKSVKDYVDPTNIFGNRNLL 658
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhh............eee.....eee.............hhhhhhhhhhh.......................hhhhhhhhhhhh..ee.hhhhhhhh....hhhhhhhhhhh.......eee...hhhhhhhhhhhhhhh..eeeee...................eeeee......eeeee....eeeee...hhhhhhhhhhhh.ee...........hhhhhhhhh....hhhhhhhhhhheeeeeee....eee.............hhhhhh.......eeeeeeee.ee...eeeeeeeee.hhhhhhhhhhhhhhh.....eeeeehhhhhhhhhh.----------------------------...eeeeeeeeehhhhhhhhhhhhhhhhhh...eehhhhhhhhhhhh..hhhhhhhhhhhh.eeeeeeeeeee..hhhhhhhhhhhhhhhhhhhh......eeeeeeeee...eeeeeeeeeee.....hhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------FAD_PCMH  PDB: D:202-384 UniProt: 202-384                                                                                                                                              ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4bc7 D  81 GIIPKKRQELMKWNGWGYNDSKFFLNKKGQLELTGKRYPLSGVALPTFKDWIQNTFGINLDHKTTSKASLNPSDTPPSIVNEDFLHELKKTNISYSQEADDRVFRAHGHCLHEIFLLREGMFERIPDIVLWPTCHDDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQMNRILWVDENNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFSTVGGWISTRASGMKKNIYGNIEDLVVHMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIAKQRCAPASIHLMDNQQFQFGHAL----------------------------NQLSVATLLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFETSAPWDRVVDLCRNVKERIRRECKEKGVQFPPLSTCRVTQTYDAGACIYFYFAFNYRGISDPLAVFEQTEAAAREEILANGGSLSHHHGVGKLRKQWLKESISDVGFGMLKSVKDYVDPTNIFGNRNLL 658
                                    90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430 |       -         -         -|      470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650        
                                                                                                                                                                                                                                                                                                                                                                                         432                          461
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4BC7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4BC7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4BC7)

(-) Gene Ontology  (17, 17)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (ADAS_CAVPO | P97275)
molecular function
    GO:0071949    FAD binding    Interacting selectively and non-covalently with the oxidized form, FAD, of flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes.
    GO:0008609    alkylglycerone-phosphate synthase activity    Catalysis of the reaction: 1-acyl-glycerone 3-phosphate + a long-chain alcohol = 1-alkyl-glycerone 3-phosphate + a long-chain acid anion.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0050660    flavin adenine dinucleotide binding    Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016614    oxidoreductase activity, acting on CH-OH group of donors    Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0008611    ether lipid biosynthetic process    The chemical reactions and pathways resulting in the formation of ether lipids, lipids that contain (normally) one lipid alcohol in ether linkage to one of the carbon atoms (normally C-1) of glycerol.
    GO:0008610    lipid biosynthetic process    The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
    GO:0006629    lipid metabolic process    The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0043231    intracellular membrane-bounded organelle    Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0005730    nucleolus    A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
    GO:0005778    peroxisomal membrane    The lipid bilayer surrounding a peroxisome.
    GO:0005777    peroxisome    A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ADAS_CAVPO | P97275: 4bby 4bc9 4bca 5adz 5ae1 5ae2 5ae3

(-) Related Entries Specified in the PDB File

4bby MAMMALIAN ALKYLDIHYDROXYACETONEPHOSPHATE SYNTHASE: WILD-TYPE
4bc9 MAMMALIAN ALKYLDIHYDROXYACETONEPHOSPHATE SYNTHASE: WILD-TYPE , ADDUCT WITH CYANOETHYL
4bca MAMMALIAN ALKYLDIHYDROXYACETONEPHOSPHATE SYNTHASE: TYR578PHE MUTANT