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(-) Description

Title :  W228S-INVESTIGATION OF THE IMPACT FROM RESIDUES W228 AND Y233 IN THE METALLO-BETA-LACTAMASE GIM-1
 
Authors :  S. Skagseth, T. J. Carlsen, G. E. K. Bjerga, J. Spencer, O. Samuelsen, H. -K. S. Leiros
Date :  17 Aug 15  (Deposition) - 23 Dec 15  (Release) - 10 Feb 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.81
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Hydrolase, Metallo-Beta-Lactamase, Gim-1, Carbapenemase, Enzyme Kinetics, Mic, (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Skagseth, T. J. Carlsen, G. E. K. Bjerga, J. Spencer, O. Samuelsen, H. S. Leiros
Role Of Residues W228 And Y233 In The Structure And Activity Of Metallo-Beta-Lactamase Gim-1.
Antimicrob. Agents Chemother. V. 60 990 2015
PubMed-ID: 26643332  |  Reference-DOI: 10.1128/AAC.02017-15

(-) Compounds

Molecule 1 - GIM-1 PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: STAR PRARE
    Mutation: YES
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 287
    Synonym: BETA-LACTAMASE, METALLO-BETA-LACTAMASE GIM-1

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
1OCS2Mod. Amino AcidCYSTEINESULFONIC ACID
2ZN2Ligand/IonZINC ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:116 , HIS A:118 , HIS A:196 , GLU B:62BINDING SITE FOR RESIDUE ZN A1297
2AC2SOFTWAREGLU A:62 , HIS B:116 , HIS B:118 , HIS B:196BINDING SITE FOR RESIDUE ZN B1296

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5ACT)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5ACT)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5ACT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5ACT)

(-) Exons   (0, 0)

(no "Exon" information available for 5ACT)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:219
                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee..eeeeeeeeee...eeeeeeeeeeee..eeeee....hhhhhhhhhhhhhhh..eeeeee....hhhhhhhhhhhhhh...eeeehhhhhhhhhh......eee...eeee....eeee...........eeee....eeeeehhh..............hhhhhhhhhhhhhhh.....eeee.......hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5act A  39 HKPLEVIKIEDGVYLHTSFKNIEGYGLVDSNGLVVLDNNQAYIIDTPWSEEDTKLLLSWATDRGYQVMASISTHSHEDRTAGIKLLNSKSIPTYTSELTKKLLAREGKPVPTHYFKDDEFTLGNGLIELYYPGAGHTEDNIVAWLPKSKILFGGcLVRSHESEGLGYVGDASISSWADSIKNIVSKKYPIQMVVPGHGKVGSSDILDHTIDLAESASNK 296
                                  ||49        59        69        79        89        99|||  ||112       122       133       143      |167       180       190       200    || 216    |  226       236       246       256       277       287         
                                 45|                                                  100||  ||                   131|              150|       175|                       205| ||     |                                         265|                   
                                  47                                                   102|  ||                    133               165        179                        209 ||     |                                          277                   
                                                                                        104  ||                                                                              211|     |                                                                
                                                                                           107|                                                                               215     |                                                                
                                                                                            109                                                                                     221-OCS                                                            


Chain B from PDB  Type:PROTEIN  Length:219
                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee..eeeeeeeeee...eeeeeeeeeeee..eeeee....hhhhhhhhhhhhhhh..eeeeee....hhhhhhhhhhhhhh...eeeehhhhhhhhhh......eee...eeee....eeee...........eeee....eeeeehhh..............hhhhhhhhhhhhhhh.....eeee.......hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5act B  38 GHKPLEVIKIEDGVYLHTSFKNIEGYGLVDSNGLVVLDNNQAYIIDTPWSEEDTKLLLSWATDRGYQVMASISTHSHEDRTAGIKLLNSKSIPTYTSELTKKLLAREGKPVPTHYFKDDEFTLGNGLIELYYPGAGHTEDNIVAWLPKSKILFGGcLVRSHESEGLGYVGDASISSWADSIKNIVSKKYPIQMVVPGHGKVGSSDILDHTIDLAESASN 295
                                   |48        58        68        78        88        98 |||  |111       121       131|      142       166       179       189       199     ||215     | 225       235       245       255       265|      286         
                                  45|                                                  100||  ||                   131|              150|       175|                       205| ||     |                                         265|                  
                                   47                                                   102|  ||                    133               165        179                        209 ||     |                                          277                  
                                                                                         104  ||                                                                              211|     |                                                               
                                                                                            107|                                                                               215     |                                                               
                                                                                             109                                                                                     221-OCS
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5ACT)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5ACT)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5ACT)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q704V1_PSEAI | Q704V1: 2ynt 2ynu 2ynv 2ynw 5acp 5acq 5acr 5acs

(-) Related Entries Specified in the PDB File

5acp W228R-INVESTIGATION OF THE IMPACT FROM RESIDUES W228 AND Y233 IN THE METALLO-BETA-LACTAMASE GIM-1
5acq W228A-INVESTIGATION OF THE IMPACT FROM RESIDUES W228 AND Y233 IN THE METALLO-BETA-LACTAMASE GIM-1
5acr W228Y-INVESTIGATION OF THE IMPACT FROM RESIDUES W228 AND Y233 IN THE METALLO-BETA-LACTAMASE GIM-1
5acs Y233A-INVESTIGATION OF THE IMPACT FROM RESIDUES W228 AND Y233 IN THE METALLO-BETA-LACTAMASE GIM-1