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(-) Description

Title :  APO GIM-1 WITH 2MOL. CRYSTAL STRUCTURES OF PSEUDOMONAS AERUGINOSA GIM-1: ACTIVE SITE PLASTICITY IN METALLO-BETA-LACTAMASES
 
Authors :  P. S. Borra, O. Samuelsen, J. Spencer, M. S. Lorentzen, H. -K. S. Leiros
Date :  18 Oct 12  (Deposition) - 24 Jul 13  (Release) - 24 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.06
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Hydrolase, Antibiotic Resistance, Residue Determinants, Loop Dynamics (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  P. S. Borra, O. Samuelsen, J. Spencer, T. R. Walsh, M. S. Lorentzen, H. -K. S. Leiros
Crystal Structures Of Pseudomonas Aeruginosa Gim-1: Active- Site Plasticity In Metallo-Beta-Lactamases.
Antimicrob. Agents Chemother. V. 57 848 2013
PubMed-ID: 23208706  |  Reference-DOI: 10.1128/AAC.02227-12

(-) Compounds

Molecule 1 - GIM-1 PROTEIN
    ChainsA, B
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System VariantSTAR PLYSS PRARE
    Organism ScientificPSEUDOMONAS AERUGINOSA
    Organism Taxid287
    SynonymMETALLO-BETA-LACTAMASE GIM-1

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (1x)A 
Biological Unit 2 (1x) B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2YNU)

(-) Sites  (0, 0)

(no "Site" information available for 2YNU)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2YNU)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2YNU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2YNU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2YNU)

(-) Exons   (0, 0)

(no "Exon" information available for 2YNU)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:217
 aligned with Q704V1_PSEAI | Q704V1 from UniProtKB/TrEMBL  Length:250

    Alignment length:217
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       
         Q704V1_PSEAI    22 KPLEVIKIEDGVYLHTSFKNIEGYGLVDSNGLVVLDNNQAYIIDTPWSEEDTKLLLSWATDRGYQVMASISTHSHEDRTAGIKLLNSKSIPTYTSELTKKLLAREGKPVPTHYFKDDEFTLGNGLIELYYPGAGHTEDNIVAWLPKSKILFGGCLVRSHEWEGLGYVGDASISSWADSIKNIVSKKYPIQMVVPGHGKVGSSDILDHTIDLAESASN 238
               SCOP domains d2ynua_ A: automated matches                                                                                                                                                                                              SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..eeeeeeeeee...eeeeeeeeeeee..eeeee....hhhhhhhhhhhhhhh..eeeeee....hhhhhhhhhhhhh....eeeehhhhhhhhhh......eee...eeee....eeee...........eeee....eeeeehhh..............hhhhhhhhhhhhhh......eeee.......hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ynu A  40 KPLEVIKIEDGVYLHTSFKNIEGYGLVDSNGLVVLDNNQAYIIDTPWSEEDTKLLLSWATDRGYQVMASISTHSHEDRTAGIKLLNSKSIPTYTSELTKKLLAREGKPVPTHYFKDDEFTLGNGLIELYYPGAGHTEDNIVAWLPKSKILFGGCLVRSHEWEGLGYVGDASISSWADSIKNIVSKKYPIQMVVPGHGKVGSSDILDHTIDLAESASN 295
                                 || 50        60        70        80        90       100||  || 113       123       134       144     ||168      |181       191       201   || |217       227       237       247       257       278       288       
                                45|                                                  100||  ||                   131|              150|       175|                       205| ||                                               265|                  
                                 47                                                   102|  ||                    133               165        179                        209 ||                                                277                  
                                                                                       104  ||                                                                              211|                                                                     
                                                                                          107|                                                                               215                                                                     
                                                                                           109                                                                                                                                                       

Chain B from PDB  Type:PROTEIN  Length:209
 aligned with Q704V1_PSEAI | Q704V1 from UniProtKB/TrEMBL  Length:250

    Alignment length:215
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231     
         Q704V1_PSEAI    22 KPLEVIKIEDGVYLHTSFKNIEGYGLVDSNGLVVLDNNQAYIIDTPWSEEDTKLLLSWATDRGYQVMASISTHSHEDRTAGIKLLNSKSIPTYTSELTKKLLAREGKPVPTHYFKDDEFTLGNGLIELYYPGAGHTEDNIVAWLPKSKILFGGCLVRSHEWEGLGYVGDASISSWADSIKNIVSKKYPIQMVVPGHGKVGSSDILDHTIDLAESA 236
               SCOP domains d2ynub_ B: automated matches                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..eeeeeeeeee...eeeeeeeeeeee..eeeee....hhhhhhhhhhhhhhh..eeeeee....hhhhhhhhhhhhhh...eeeehhhhhhhhhh......eee...eeee....eeee...........eeee....eeeeehhh........------hhhhhhhhhhhhhhhh....eeee.......hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ynu B  40 KPLEVIKIEDGVYLHTSFKNIEGYGLVDSNGLVVLDNNQAYIIDTPWSEEDTKLLLSWATDRGYQVMASISTHSHEDRTAGIKLLNSKSIPTYTSELTKKLLAREGKPVPTHYFKDDEFTLGNGLIELYYPGAGHTEDNIVAWLPKSKILFGGCLVRSHEWEGL------SISSWADSIKNIVSKKYPIQMVVPGHGKVGSSDILDHTIDLAESA 293
                                 || 50        60        70        80        90       100||  || 113       123       134       144     ||168      |181       191       201   || |217       227   |     -|      247       257       278       288     
                                45|                                                  100||  ||                   131|              150|       175|                       205| ||             231    238                        265|                
                                 47                                                   102|  ||                    133               165        179                        209 ||                                                277                
                                                                                       104  ||                                                                              211|                                                                   
                                                                                          107|                                                                               215                                                                   
                                                                                           109                                                                                                                                                     

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2YNU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2YNU)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Q704V1_PSEAI | Q704V1)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q704V1_PSEAI | Q704V12ynt 2ynv 2ynw 5acp 5acq 5acr 5acs 5act

(-) Related Entries Specified in the PDB File

2ynt GIM-1-3MOL NATIVE. CRYSTAL STRUCTURES OF PSEUDOMONAS AERUGINOSA GIM-1: ACTIVE SITE PLASTICITY IN METALLO- BETA-LACTAMASES
2ynv CYS221 OXIDIZED, MONO ZINC GIM-1 - GIM-1-OX. CRYSTAL STRUCTURES OF PSEUDOMONAS AERUGINOSA GIM-1: ACTIVE SITE PLASTICITY IN METALLO-BETA-LACTAMASES
2ynw GIM-1-2MOL NATIVE. CRYSTAL STRUCTURES OF PSEUDOMONAS AERUGINOSA GIM-1: ACTIVE SITE PLASTICITY IN METALLO- BETA-LACTAMASES