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(-) Description

Title :  CRYSTAL STRUCTURE OF SIMULIUM UBIQUITUM CPV20 POLYHEDRA
 
Authors :  X. Ji, D. Axford, R. Owen, G. Evans, H. M. Ginn, G. Sutton, D. I. Stuart
Date :  17 Jul 15  (Deposition) - 02 Sep 15  (Release) - 14 Oct 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.82
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Keywords :  Viral Protein, Insect Virus Occlusion Body, Microcrystal (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. Ji, D. Axford, R. Owen, G. Evans, H. M. Ginn, G. Sutton, D. I. Stuart
Polyhedra Structures And The Evolution Of The Insect Viruses.
J. Struct. Biol. V. 192 88 2015
PubMed-ID: 26291392  |  Reference-DOI: 10.1016/J.JSB.2015.08.009

(-) Compounds

Molecule 1 - POLYHEDRIN
    Chains: A
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: SF9
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Organism Scientific: SIMULIUM UBIQUITUM CYPOVIRUS
    Organism Taxid: 397545

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric Unit (2, 2)
No.NameCountTypeFull Name
1ACE1Mod. Amino AcidACETYL GROUP
2UTP1Ligand/IonURIDINE 5'-TRIPHOSPHATE
Biological Unit 1 (2, 6)
No.NameCountTypeFull Name
1ACE3Mod. Amino AcidACETYL GROUP
2UTP3Ligand/IonURIDINE 5'-TRIPHOSPHATE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:44 , MET A:70 , LYS A:72 , ASN A:77 , ARG A:78 , HIS A:79 , LYS A:80 , HIS A:95 , HIS A:96 , LEU A:99 , PHE A:100 , GLU A:101 , HOH A:2086 , HOH A:2088BINDING SITE FOR RESIDUE UTP A1245

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5A9A)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Pro A:89 -Asp A:90

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5A9A)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 5A9A)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:243
                                                                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhhhhhhhh....eeeeeeee.....eeeeeeee..eeeeee.hhhhh...hhhhhhhhhhhhhhhhh................eeeeeee...hhhh.eeeee........hhhhh.......ee.hhhee....eeeeeee......eeeeeee.............hhhhhhhhh..ee...eee.hhhhhhhhhhhhh..ee.....eee......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5a9a A   1 xSNQPFNQPNVLQERQHLVNRQLVQGPNVQDAIKRVAIIFIYKNGSYRLIDYNAPEFINGYFNWRDMLYMDKPAHSNRHKEFENQIRRPDHGDSHHPELFEYPVAIMISANGNICWENVRVEVENEDCLNHEDWRRARAWGPRCYKGSQMMKCSALGRFLYIPLRCQNESLKFKFPSRMSGGDNRYSSHSIGQVIQNNIIIRNNPLYLDNEGDLIDYMQAKNLCYIDSAAVVDCNGLAGDSEC 243
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240   
                            |                                                                                                                                                                                                                                                  
                            1-ACE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5A9A)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5A9A)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5A9A)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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  5a9a
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

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5a8t CRYSTAL STRUCTURE OF ANTHERAEA MYLITTA CPV4 POLYHEDRA TYPE 2
5a8u CRYSTAL STRUCTURE OF ORGYIA PSEUDOTSUGATA CPV5 POLYHEDRA
5a8v CRYSTAL STRUCTURE OF ORGYIA PSEUDOTSUGATA CPV5 POLYHEDRA WITH SEMET SUBSTITUTION
5a96 CRYSTAL STRUCTURE OF LYMANTRIA DISPAR CPV14 POLYHEDRA
5a98 CRYSTAL STRUCTURE OF TRICHOPLUSIA NI CPV15 POLYHEDRA
5a99 CRYSTAL STRUCTURE OF OPEROPHTERA BRUMATA CPV19 POLYHEDRA
5a9b CRYSTAL STRUCTURE OF BOMBYX MORI CPV1 POLYHEDRA BASE DOMAIN DELETED MUTANT
5a9c CRYSTAL STRUCTURE OF ANTHERAEA MYLITTA CPV4 POLYHEDRA BASE DOMAIN DELETED MUTANT
5a9p CRYSTAL STRUCTURE OF OPEROPHTERA BRUMATA CPV18 POLYHEDRA