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(-) Description

Title :  CRYSTAL STRUCTURE OF TRICHOPLUSIA NI CPV15 POLYHEDRA
 
Authors :  X. Ji, D. Axford, R. Owen, G. Evans, H. M. Ginn, G. Sutton, D. I. Stuart
Date :  17 Jul 15  (Deposition) - 02 Sep 15  (Release) - 14 Oct 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.82
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Keywords :  Viral Protein, Insect Virus Occlusion Body, Microcrystal (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. Ji, D. Axford, R. Owen, G. Evans, H. M. Ginn, G. Sutton, D. I. Stuart
Polyhedra Structures And The Evolution Of The Insect Viruses.
J. Struct. Biol. V. 192 88 2015
PubMed-ID: 26291392  |  Reference-DOI: 10.1016/J.JSB.2015.08.009

(-) Compounds

Molecule 1 - POLYHEDRIN
    Chains: A
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: SF9
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Organism Scientific: TRICHOPLUSIA NI CYPOVIRUS 15
    Organism Taxid: 134606

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric Unit (2, 5)
No.NameCountTypeFull Name
1ATP2Ligand/IonADENOSINE-5'-TRIPHOSPHATE
2MG3Ligand/IonMAGNESIUM ION
Biological Unit 1 (1, 6)
No.NameCountTypeFull Name
1ATP6Ligand/IonADENOSINE-5'-TRIPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:14 , ARG A:21 , GLN A:136 , LYS A:141 , GLY A:157 , MET A:158 , SER A:159 , LYS A:164 , GLU A:165 , ASP A:166 , LYS A:246 , MG A:250 , HOH A:2005 , HOH A:2006 , HOH A:2109 , HOH A:2113 , HOH A:2117 , HOH A:2162 , HOH A:2165 , HOH A:2168 , HOH A:2169 , HOH A:2170 , HOH A:2171 , HOH A:2172BINDING SITE FOR RESIDUE ATP A 249
2AC2SOFTWAREATP A:249 , HOH A:2006 , HOH A:2165 , HOH A:2166BINDING SITE FOR RESIDUE MG A 250
3AC3SOFTWAREGLU A:165 , ATP A:252 , HOH A:2013 , HOH A:2014 , HOH A:2116 , HOH A:2173BINDING SITE FOR RESIDUE MG A 251
4AC4SOFTWARELYS A:20 , PHE A:23 , ARG A:147 , ARG A:148 , LYS A:164 , ASP A:166 , CYS A:177 , LYS A:178 , TYR A:244 , MG A:251 , HOH A:2013 , HOH A:2014 , HOH A:2118 , HOH A:2173 , HOH A:2175BINDING SITE FOR RESIDUE ATP A 252
5AC5SOFTWAREHOH A:2005 , HOH A:2012 , HOH A:2106 , HOH A:2157 , HOH A:2162 , HOH A:2170BINDING SITE FOR RESIDUE MG A 253

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5A98)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Asp A:214 -Lys A:215

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5A98)

(-) Exons   (0, 0)

(no "Exon" information available for 5A98)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:235
                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhh....eeeeeeee.....eeeeeeee..eeeeeehhhhhhh.hhhhhhhhhhhhh................eeeeeee...hhhhheeeee.......................hhhhh............eeeeeee.........eeeeeee.............hhhhhhhh......eeeee.hhhhhhhhh................ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5a98 A   1 MEDYTLREREQEIYNRQVIKRPFDPDSYLTADLHLYLKNGKTLTIHIERNLFFSHEFTWEEICRGKCDTQEYIDGLVADNGGRSTHNSSYLEPVAFQLTLLGNFDLGSIHLRIGDYLGFRDGQRFPCKETIHGRRDTIGPFMQGMSGKWAKEDYIHTYSGRFDCKTSRHPSIFLAFMRANQDGHSSFAPENMRNALLYSGDKSPRYILMDNEHTLINNFIIPRCLPYRDQYGKDY 248
                                    10        20        30        40        50        60    ||  83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243     
                                                                                           65|                                                                                                                                                                         
                                                                                            79
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5A98)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5A98)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5A98)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 5A98)

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  5a98
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 Related Entries

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(-) Related Entries Specified in the PDB File

5a8s CRYSTAL STRUCTURE OF ANTHERAEA MYLITTA CPV4 POLYHEDRA TYPE 1
5a8t CRYSTAL STRUCTURE OF ANTHERAEA MYLITTA CPV4 POLYHEDRA TYPE 2
5a8u CRYSTAL STRUCTURE OF ORGYIA PSEUDOTSUGATA CPV5 POLYHEDRA
5a8v CRYSTAL STRUCTURE OF ORGYIA PSEUDOTSUGATA CPV5 POLYHEDRA WITH SEMET SUBSTITUTION
5a96 CRYSTAL STRUCTURE OF LYMANTRIA DISPAR CPV14 POLYHEDRA
5a99 CRYSTAL STRUCTURE OF OPEROPHTERA BRUMATA CPV19 POLYHEDRA
5a9a CRYSTAL STRUCTURE OF SIMULIUM UBIQUITUM CPV20 POLYHEDRA
5a9b CRYSTAL STRUCTURE OF BOMBYX MORI CPV1 POLYHEDRA BASE DOMAIN DELETED MUTANT
5a9c CRYSTAL STRUCTURE OF ANTHERAEA MYLITTA CPV4 POLYHEDRA BASE DOMAIN DELETED MUTANT
5a9p CRYSTAL STRUCTURE OF OPEROPHTERA BRUMATA CPV18 POLYHEDRA