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(-) Description

Title :  ATGSTF2 FROM ARABIDOPSIS THALIANA IN COMPLEX WITH QUERCETRIN
 
Authors :  L. Ahmad, E. Rylott, N. C. Bruce, R. Edwards, G. Grogan
Date :  15 Jun 15  (Deposition) - 29 Jun 16  (Release) - 01 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.25
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Transferase, Glutathione-S-Transferase, Gst, Plant, Arabidopsis (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Ahmad, E. L. Rylott, N. C. Bruce, R. Edwards, G. Grogan
Structural Evidence For Arabidopsis Glutathione Transferase Atgstf2 Functioning As A Transporter Of Small Organic Ligands.
Febs Open Bio V. 7 122 2017
PubMed-ID: 28174680  |  Reference-DOI: 10.1002/2211-5463.12168

(-) Compounds

Molecule 1 - GLUTATHIONE S-TRANSFERASE F2
    Chains: A, B, C, D, E, F
    EC Number: 2.5.1.18
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET24A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: TUNER
    Expression System Vector Type: PLASMID
    Organism Common: THALE CRESS
    Organism Scientific: ARABIDOPSIS THALIANA
    Organism Taxid: 3702
    Synonym: ATGSTF2,24 KDA AUXIN-BINDING PROTEIN, ATPM24, GST CLASS-PHI MEMBER 2, ATGSTF2

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 14)

Asymmetric/Biological Unit (2, 14)
No.NameCountTypeFull Name
1ACT6Ligand/IonACETATE ION
2QCT8Ligand/Ion2-(3,4-DIHYDROXYPHENYL)-5,7-DIHYDROXY-4-OXO-4H-CHROMEN-3-YL 6-DEOXY-ALPHA-L-MANNOPYRANOSIDE

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREILE E:99 , GLY E:103 , VAL E:150 , ARG E:154 , LEU E:161 , THR E:169 , HOH E:2031 , HOH E:2042 , SER F:48 , ARG F:49 , PRO F:51 , PHE F:52 , LYS F:64 , PHE F:66BINDING SITE FOR RESIDUE QCT E 1213
02AC2SOFTWAREILE A:99 , ILE A:102 , GLY A:103 , VAL A:150 , ARG A:154 , LEU A:161 , THR A:169 , HOH A:2045 , HOH A:2075 , HOH A:2076 , SER B:48 , ARG B:49 , PHE B:52 , LYS B:64 , PHE B:66 , GLU E:191BINDING SITE FOR RESIDUE QCT A 1213
03AC3SOFTWARESER C:48 , ARG C:49 , LYS C:64 , PHE C:66 , HOH C:2026 , ILE D:99 , GLY D:103 , VAL D:150 , ARG D:154 , LEU D:161 , THR D:169 , HOH D:2027BINDING SITE FOR RESIDUE QCT D 1213
04AC4SOFTWAREGLY C:103 , VAL C:150 , ARG C:154 , LEU C:161 , THR C:169 , HOH C:2039 , SER D:48 , ARG D:49 , PRO D:51 , PHE D:52 , LYS D:64 , PHE D:66BINDING SITE FOR RESIDUE QCT C 1213
05AC5SOFTWARESER A:48 , ARG A:49 , PHE A:52 , LYS A:64 , PHE A:66 , HOH A:2023 , HOH A:2031 , ILE B:99 , GLY B:103 , VAL B:150 , ARG B:154 , LEU B:161 , THR B:169 , HOH B:2038BINDING SITE FOR RESIDUE QCT B 1213
06AC6SOFTWAREGLN C:73 , TYR C:74 , HIS C:77 , TYR C:97 , HIS D:77 , ILE D:94 , TYR D:97 , ALA D:101BINDING SITE FOR RESIDUE QCT C 1214
07AC7SOFTWAREGLN E:73 , TYR E:74 , HIS E:77 , TYR E:97 , HOH E:2029 , GLN F:73 , HIS F:77 , SER F:91 , LYS F:92 , ASN F:93 , ILE F:94 , TYR F:97 , ALA F:101BINDING SITE FOR RESIDUE QCT F 1213
08AC8SOFTWAREGLN A:73 , HIS A:77 , SER A:91 , LYS A:92 , ASN A:93 , ILE A:94 , TYR A:97 , ALA A:101 , HOH A:2077 , HOH A:2079 , GLN B:73 , HIS B:77 , TYR B:97BINDING SITE FOR RESIDUE QCT A 1214
09AC9SOFTWAREALA F:14 , PRO F:56 , GLU F:67 , SER F:68 , HOH F:2006 , HOH F:2020BINDING SITE FOR RESIDUE ACT F 1214
10BC1SOFTWAREALA A:14 , PRO A:56 , GLU A:67 , SER A:68 , HOH A:2028BINDING SITE FOR RESIDUE ACT A 1215
11BC2SOFTWAREHOH A:2046 , ALA B:14 , PRO B:56 , GLU B:67 , SER B:68 , ARG B:69 , HOH B:2021BINDING SITE FOR RESIDUE ACT B 1214
12BC3SOFTWAREALA C:14 , PRO C:56 , GLU C:67 , SER C:68 , ARG C:69 , HOH C:2009 , HOH C:2020BINDING SITE FOR RESIDUE ACT C 1215
13BC4SOFTWAREALA E:14 , PRO E:56 , GLU E:67 , SER E:68 , ARG E:69 , HOH E:2005 , HOH E:2017BINDING SITE FOR RESIDUE ACT E 1214
14BC5SOFTWAREGLU D:67 , SER D:68 , ARG D:69 , HOH D:2015BINDING SITE FOR RESIDUE ACT D 1214

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5A4W)

(-) Cis Peptide Bonds  (12, 12)

Asymmetric/Biological Unit
No.Residues
1Glu A:44 -Pro A:45
2Val A:55 -Pro A:56
3Glu B:44 -Pro B:45
4Val B:55 -Pro B:56
5Glu C:44 -Pro C:45
6Val C:55 -Pro C:56
7Glu D:44 -Pro D:45
8Val D:55 -Pro D:56
9Glu E:44 -Pro E:45
10Val E:55 -Pro E:56
11Glu F:44 -Pro F:45
12Val F:55 -Pro F:56

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5A4W)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5A4W)

(-) Exons   (0, 0)

(no "Exon" information available for 5A4W)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:211
                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...hhhhhhhhhhhhhh....eeee.....hhhhh.hhhhh.......eeee..eeeehhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5a4w A   2 AGIKVFGHPASIATRRVLIALHEKNLDFELVHVELKDGEHKKEPFLSRNPFGQVPAFEDGDLKLFESRAITQYIAHRYENQGTNLLQTDSKNISQYAIMAIGMQVEDHQFDPVASKLAFEQIFKSIYGLTTDEAVVAEEEAKLAKVLDVYEARLKEFKYLAGETFTLTDLHHIPAIQYLLGTPTKKLFTERPRVNEWVAEITKRPASEKVQ 212
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211 


Chain B from PDB  Type:PROTEIN  Length:210
                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhhh....eeee.hhhhhhhhh.hhhhh.......eeee..eeeehhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5a4w B   3 GIKVFGHPASIATRRVLIALHEKNLDFELVHVELKDGEHKKEPFLSRNPFGQVPAFEDGDLKLFESRAITQYIAHRYENQGTNLLQTDSKNISQYAIMAIGMQVEDHQFDPVASKLAFEQIFKSIYGLTTDEAVVAEEEAKLAKVLDVYEARLKEFKYLAGETFTLTDLHHIPAIQYLLGTPTKKLFTERPRVNEWVAEITKRPASEKVQ 212
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212


Chain C from PDB  Type:PROTEIN  Length:211
                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...hhhhhhhhhhhhhh....eeee.....hhhhh.hhhhh.......eeee..eeeehhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5a4w C   2 AGIKVFGHPASIATRRVLIALHEKNLDFELVHVELKDGEHKKEPFLSRNPFGQVPAFEDGDLKLFESRAITQYIAHRYENQGTNLLQTDSKNISQYAIMAIGMQVEDHQFDPVASKLAFEQIFKSIYGLTTDEAVVAEEEAKLAKVLDVYEARLKEFKYLAGETFTLTDLHHIPAIQYLLGTPTKKLFTERPRVNEWVAEITKRPASEKVQ 212
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211 


Chain D from PDB  Type:PROTEIN  Length:211
                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...hhhhhhhhhhhhhh....eeee.hhhhhhhhh.hhhhhh......eeee..eeeehhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5a4w D   2 AGIKVFGHPASIATRRVLIALHEKNLDFELVHVELKDGEHKKEPFLSRNPFGQVPAFEDGDLKLFESRAITQYIAHRYENQGTNLLQTDSKNISQYAIMAIGMQVEDHQFDPVASKLAFEQIFKSIYGLTTDEAVVAEEEAKLAKVLDVYEARLKEFKYLAGETFTLTDLHHIPAIQYLLGTPTKKLFTERPRVNEWVAEITKRPASEKVQ 212
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211 


Chain E from PDB  Type:PROTEIN  Length:211
                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...hhhhhhhhhhhhhh....eeee.hhhhhhhhh.hhhhh.......eeee..eeeehhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5a4w E   2 AGIKVFGHPASIATRRVLIALHEKNLDFELVHVELKDGEHKKEPFLSRNPFGQVPAFEDGDLKLFESRAITQYIAHRYENQGTNLLQTDSKNISQYAIMAIGMQVEDHQFDPVASKLAFEQIFKSIYGLTTDEAVVAEEEAKLAKVLDVYEARLKEFKYLAGETFTLTDLHHIPAIQYLLGTPTKKLFTERPRVNEWVAEITKRPASEKVQ 212
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211 


Chain F from PDB  Type:PROTEIN  Length:204
                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhhh....eeee.hhhhhhhhh.hhhhhh......eeee..eeeehhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5a4w F   3 GIKVFGHPASIATRRVLIALHEKNLDFELVHVELKDGEHKKEPFLSRNPFGQVPAFEDGDLKLFESRAITQYIAHRYENQGTNLLQTDSKNISQYAIMAIGMQVEDHQFDPVASKLAFEQIFKSIYGLVAEEEAKLAKVLDVYEARLKEFKYLAGETFTLTDLHHIPAIQYLLGTPTKKLFTERPRVNEWVAEITKRPASEKVQ 212
                                    12        22        32        42        52        62        72        82        92       102       112       122       138       148       158       168       178       188       198       208    
                                                                                                                                                         130|                                                                           
                                                                                                                                                          137
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5A4W)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5A4W)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5A4W)

(-) Gene Ontology  (31, 31)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GSTF2_ARATH | P46422: 1bx9 1gnw 5a4u 5a4v 5a5k

(-) Related Entries Specified in the PDB File

5a4u ATGSTF2 FROM ARABIDOPSIS THALIANA IN COMPLEX WITH INDOLE -3-ALDEHYDE
5a4v ATGSTF2 FROM ARABIDOPSIS THALIANA IN COMPLEX WITH QUERCETIN
5a4y ATGSTF2 FROM ARABIDOPSIS THALIANA IN COMPLEX WITH CAMALEXIN