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(-) Description

Title :  ATGSTF2 FROM ARABIDOPSIS THALIANA IN COMPLEX WITH INDOLE-3-ALDEHYDE
 
Authors :  L. Ahmad, E. Rylott, N. C. Bruce, R. Edwards, G. Grogan
Date :  15 Jun 15  (Deposition) - 29 Jun 16  (Release) - 01 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Transferase, Glutathione-S-Transferase, Gst, Plant, Arabidopsis (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Ahmad, E. L. Rylott, N. C. Bruce, R. Edwards, G. Grogan
Structural Evidence For Arabidopsis Glutathione Transferase Atgstf2 Functioning As A Transporter Of Small Organic Ligands.
Febs Open Bio V. 7 122 2017
PubMed-ID: 28174680  |  Reference-DOI: 10.1002/2211-5463.12168

(-) Compounds

Molecule 1 - GLUTATHIONE S-TRANSFERASE F2
    Chains: A, B, C, D, E, F
    EC Number: 2.5.1.18
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET24A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: TUNER
    Organism Common: THALE CRESS
    Organism Scientific: ARABIDOPSIS THALIANA
    Organism Taxid: 3702
    Synonym: ATGSTF2,24 KDA AUXIN-BINDING PROTEIN, ATPM24, GST CLASS-PHI MEMBER 2, ATGSTF2

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 13)

Asymmetric/Biological Unit (2, 13)
No.NameCountTypeFull Name
1ACT5Ligand/IonACETATE ION
2I3A8Ligand/Ion1H-INDOLE-3-CARBALDEHYDE

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREILE B:99 , GLY B:103 , TYR B:151 , ARG B:154 , LEU B:161 , ALA B:162 , THR B:169 , HOH B:2070BINDING SITE FOR RESIDUE I3A B 1213
02AC2SOFTWAREILE A:99 , GLY A:103 , ARG A:154 , LEU A:161 , ALA A:162 , THR A:169BINDING SITE FOR RESIDUE I3A A 1213
03AC3SOFTWAREILE D:99 , GLY D:103 , ARG D:154 , LEU D:161 , ALA D:162 , THR D:169BINDING SITE FOR RESIDUE I3A D 1213
04AC4SOFTWAREILE C:99 , GLY C:103 , TYR C:151 , ARG C:154 , LEU C:161 , ALA C:162 , THR C:169BINDING SITE FOR RESIDUE I3A C 1213
05AC5SOFTWAREILE F:99 , GLY F:103 , ARG F:154 , LEU F:161 , ALA F:162 , THR F:169BINDING SITE FOR RESIDUE I3A F 1213
06AC6SOFTWAREILE E:99 , GLY E:103 , TYR E:151 , ARG E:154 , LEU E:161 , ALA E:162 , THR E:169BINDING SITE FOR RESIDUE I3A E 1213
07AC7SOFTWAREALA E:70 , GLN E:73 , TYR E:74 , HIS E:77 , TYR F:97 , ALA F:98BINDING SITE FOR RESIDUE I3A F 1214
08AC8SOFTWARETYR C:97 , ALA C:98 , GLN D:73 , TYR D:74 , HIS D:77 , TYR D:97BINDING SITE FOR RESIDUE I3A C 1214
09AC9SOFTWAREALA F:14 , PRO F:56 , GLU F:67 , SER F:68 , HOH F:2008 , HOH F:2024BINDING SITE FOR RESIDUE ACT F 1215
10BC1SOFTWAREALA A:14 , PRO A:56 , GLU A:67 , SER A:68 , HOH A:2033BINDING SITE FOR RESIDUE ACT A 1214
11BC2SOFTWAREALA B:14 , PRO B:56 , GLU B:67 , SER B:68 , HOH B:2022BINDING SITE FOR RESIDUE ACT B 1214
12BC3SOFTWAREALA C:14 , PRO C:56 , GLU C:67 , SER C:68 , HOH C:2011 , HOH C:2023BINDING SITE FOR RESIDUE ACT C 1215
13BC4SOFTWAREALA E:14 , PRO E:56 , GLU E:67 , SER E:68 , HOH E:2021 , HOH E:2026BINDING SITE FOR RESIDUE ACT E 1214

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5A4U)

(-) Cis Peptide Bonds  (12, 12)

Asymmetric/Biological Unit
No.Residues
1Glu A:44 -Pro A:45
2Val A:55 -Pro A:56
3Glu B:44 -Pro B:45
4Val B:55 -Pro B:56
5Glu C:44 -Pro C:45
6Val C:55 -Pro C:56
7Glu D:44 -Pro D:45
8Val D:55 -Pro D:56
9Glu E:44 -Pro E:45
10Val E:55 -Pro E:56
11Glu F:44 -Pro F:45
12Val F:55 -Pro F:56

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5A4U)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5A4U)

(-) Exons   (0, 0)

(no "Exon" information available for 5A4U)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:211
                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...hhhhhhhhhhhhhh....eeee.hhhhhhhhh.hhhhhh......eeee..eeeehhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5a4u A   2 AGIKVFGHPASIATRRVLIALHEKNLDFELVHVELKDGEHKKEPFLSRNPFGQVPAFEDGDLKLFESRAITQYIAHRYENQGTNLLQTDSKNISQYAIMAIGMQVEDHQFDPVASKLAFEQIFKSIYGLTTDEAVVAEEEAKLAKVLDVYEARLKEFKYLAGETFTLTDLHHIPAIQYLLGTPTKKLFTERPRVNEWVAEITKRPASEKVQ 212
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211 


Chain B from PDB  Type:PROTEIN  Length:210
                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhhh....eeee.hhhhhhhhh.hhhhhh......eeee..eeeehhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5a4u B   3 GIKVFGHPASIATRRVLIALHEKNLDFELVHVELKDGEHKKEPFLSRNPFGQVPAFEDGDLKLFESRAITQYIAHRYENQGTNLLQTDSKNISQYAIMAIGMQVEDHQFDPVASKLAFEQIFKSIYGLTTDEAVVAEEEAKLAKVLDVYEARLKEFKYLAGETFTLTDLHHIPAIQYLLGTPTKKLFTERPRVNEWVAEITKRPASEKVQ 212
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212


Chain C from PDB  Type:PROTEIN  Length:211
                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...hhhhhhhhhhhhhh....eeee.hhhhhhhhh.hhhhhh......eeee..eeeehhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5a4u C   2 AGIKVFGHPASIATRRVLIALHEKNLDFELVHVELKDGEHKKEPFLSRNPFGQVPAFEDGDLKLFESRAITQYIAHRYENQGTNLLQTDSKNISQYAIMAIGMQVEDHQFDPVASKLAFEQIFKSIYGLTTDEAVVAEEEAKLAKVLDVYEARLKEFKYLAGETFTLTDLHHIPAIQYLLGTPTKKLFTERPRVNEWVAEITKRPASEKVQ 212
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211 


Chain D from PDB  Type:PROTEIN  Length:211
                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...hhhhhhhhhhhhhh....eeee.hhhhhhhhh.hhhhhh......eeee..eeeehhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5a4u D   2 AGIKVFGHPASIATRRVLIALHEKNLDFELVHVELKDGEHKKEPFLSRNPFGQVPAFEDGDLKLFESRAITQYIAHRYENQGTNLLQTDSKNISQYAIMAIGMQVEDHQFDPVASKLAFEQIFKSIYGLTTDEAVVAEEEAKLAKVLDVYEARLKEFKYLAGETFTLTDLHHIPAIQYLLGTPTKKLFTERPRVNEWVAEITKRPASEKVQ 212
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211 


Chain E from PDB  Type:PROTEIN  Length:211
                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...hhhhhhhhhhhhhh....eeee.hhhhhhhhh.hhhhhh......eeee..eeeehhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5a4u E   2 AGIKVFGHPASIATRRVLIALHEKNLDFELVHVELKDGEHKKEPFLSRNPFGQVPAFEDGDLKLFESRAITQYIAHRYENQGTNLLQTDSKNISQYAIMAIGMQVEDHQFDPVASKLAFEQIFKSIYGLTTDEAVVAEEEAKLAKVLDVYEARLKEFKYLAGETFTLTDLHHIPAIQYLLGTPTKKLFTERPRVNEWVAEITKRPASEKVQ 212
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211 


Chain F from PDB  Type:PROTEIN  Length:206
                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhhh....eeee.hhhhhhhhh.hhhhhh......eeee..eeeehhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5a4u F   3 GIKVFGHPASIATRRVLIALHEKNLDFELVHVELKDGEHKKEPFLSRNPFGQVPAFEDGDLKLFESRAITQYIAHRYENQGTNLLQTDSKNISQYAIMAIGMQVEDHQFDPVASKLAFEQIFKSIYGLAVVAEEEAKLAKVLDVYEARLKEFKYLAGETFTLTDLHHIPAIQYLLGTPTKKLFTERPRVNEWVAEITKRPASEKVQ 212
                                    12        22        32        42        52        62        72        82        92       102       112       122       136       146       156       166       176       186       196       206      
                                                                                                                                                         130|                                                                             
                                                                                                                                                          135
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5A4U)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5A4U)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5A4U)

(-) Gene Ontology  (31, 31)

Asymmetric/Biological Unit(hide GO term definitions)

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  2.5.1.18
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GSTF2_ARATH | P46422: 1bx9 1gnw 5a4v 5a4w 5a5k

(-) Related Entries Specified in the PDB File

5a4v ATGSTF2 FROM ARABIDOPSIS THALIANA IN COMPLEX WITH QUERCETIN
5a4w ATGSTF2 FROM ARABIDOPSIS THALIANA IN COMPLEX WITH QUERCETRIN