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(-) Description

Title :  CRYSTAL STRUCTURE OF THE BTB DOMAIN OF HUMAN KCTD16
 
Authors :  D. M. Pinkas, C. E. Sanvitale, N. Solcan, S. Goubin, P. Canning, S. E. Dixon Clarke, R. Talon, H. J. Wiggers, F. Fitzpatrick, C. Tallan J. Kopec, R. Chalk, J. Doutch, T. Krojer, N. A. Burgess-Brown, F. Von D C. H. Arrowsmith, A. M. Edwards, C. Bountra, A. Bullock
Date :  28 Apr 15  (Deposition) - 04 Nov 15  (Release) - 04 Nov 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.76
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  F  (1x)
Biol. Unit 7:  G  (1x)
Biol. Unit 8:  H  (1x)
Biol. Unit 9:  I  (1x)
Biol. Unit 10:  J  (1x)
Biol. Unit 11:  K  (1x)
Biol. Unit 12:  L  (1x)
Biol. Unit 13:  M  (1x)
Biol. Unit 14:  N  (1x)
Biol. Unit 15:  O  (1x)
Keywords :  Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. M. Pinkas, C. E. Sanvitale, N. Solcan, S. Goubin, P. Canning, S. E. Dixon Clarke, R. Talon, H. J. Wiggers, F. Fitzpatrick, C. Tallant, J. Kopec, R. Chalk, J. Doutch, T. Krojer, N. A. Burgess-Brown, F. Von Delft, C. H. Arrowsmith, A. M. Edwards, C. Bountra, A. Bullock
Crystal Structure Of The Btb Domain Of Human Kctd16
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - BTB/POZ DOMAIN-CONTAINING PROTEIN KCTD16
    Chains: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Fragment: BTB DOMAIN, UNP RESIDUES 16-133
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: KCTD16, POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING PROTEIN 16

 Structural Features

(-) Chains, Units

  123456789101112131415
Asymmetric Unit : ABCDEFGHIJKLMNO
Biological Unit 1 (1x): A              
Biological Unit 2 (1x):  B             
Biological Unit 3 (1x):   C            
Biological Unit 4 (1x):    D           
Biological Unit 5 (1x):     E          
Biological Unit 6 (1x):      F         
Biological Unit 7 (1x):       G        
Biological Unit 8 (1x):        H       
Biological Unit 9 (1x):         I      
Biological Unit 10 (1x):          J     
Biological Unit 11 (1x):           K    
Biological Unit 12 (1x):            L   
Biological Unit 13 (1x):             M  
Biological Unit 14 (1x):              N 
Biological Unit 15 (1x):               O

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5A15)

(-) Sites  (0, 0)

(no "Site" information available for 5A15)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5A15)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5A15)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5A15)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5A15)

(-) Exons   (0, 0)

(no "Exon" information available for 5A15)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:95
                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..eeeeeehhhhh....hhhhhhhh.........eee.....hhhhhhhhhhhh.........hhhhhhhhhhhh.hhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                 5a15 A  23 FPEVVELNVGGQVYFTRHSTLISIPHSLLWKMFSPLAKDSKGRFFIDRDGFLFRYILDYLRDRQVVLPDHFPEKGRLKREAEYFQLPDLVKLLTP 124
                                    32        42        52    ||  69        79        89        99       109       119     
                                                             57|                                                           
                                                              65                                                           


Chain B from PDB  Type:PROTEIN  Length:95
                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..eeeeeehhhhh....hhhhhhhh.........eee.....hhhhhhhhhhhh.........hhhhhhhhhhhh.hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                 5a15 B  23 FPEVVELNVGGQVYFTRHSTLISIPHSLLWKMFSPLAKDSKGRFFIDRDGFLFRYILDYLRDRQVVLPDHFPEKGRLKREAEYFQLPDLVKLLTP 124
                                    32        42        52    ||  69        79        89        99       109       119     
                                                             57|                                                           
                                                              65                                                           


Chain C from PDB  Type:PROTEIN  Length:95
                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..eeeeeehhhhh....hhhhhhhh.........eee.....hhhhhhhhhhhh.........hhhhhhhhhhhh.hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                 5a15 C  23 FPEVVELNVGGQVYFTRHSTLISIPHSLLWKMFSPLAKDSKGRFFIDRDGFLFRYILDYLRDRQVVLPDHFPEKGRLKREAEYFQLPDLVKLLTP 124
                                    32        42        52    ||  69        79        89        99       109       119     
                                                             57|                                                           
                                                              65                                                           


Chain D from PDB  Type:PROTEIN  Length:95
                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..eeeeeehhhhh....hhhhhhhh.........eee.....hhhhhhhhhhhh.........hhhhhhhhhhhh.hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                 5a15 D  23 FPEVVELNVGGQVYFTRHSTLISIPHSLLWKMFSPLAKDSKGRFFIDRDGFLFRYILDYLRDRQVVLPDHFPEKGRLKREAEYFQLPDLVKLLTP 124
                                    32        42        52    ||  69        79        89        99       109       119     
                                                             57|                                                           
                                                              65                                                           


Chain E from PDB  Type:PROTEIN  Length:95
                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..eeeeeehhhhh....hhhhhhhh.........eee.....hhhhhhhhhhhh.........hhhhhhhhhhhh.hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                 5a15 E  23 FPEVVELNVGGQVYFTRHSTLISIPHSLLWKMFSPLAKDSKGRFFIDRDGFLFRYILDYLRDRQVVLPDHFPEKGRLKREAEYFQLPDLVKLLTP 124
                                    32        42        52    ||  69        79        89        99       109       119     
                                                             57|                                                           
                                                              65                                                           


Chain F from PDB  Type:PROTEIN  Length:95
                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..eeeeeehhhhh....hhhhhhhh.........eee.....hhhhhhhhhhhh.........hhhhhhhhhhhh.hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                 5a15 F  23 FPEVVELNVGGQVYFTRHSTLISIPHSLLWKMFSPLAKDSKGRFFIDRDGFLFRYILDYLRDRQVVLPDHFPEKGRLKREAEYFQLPDLVKLLTP 124
                                    32        42        52    ||  69        79        89        99       109       119     
                                                             57|                                                           
                                                              65                                                           


Chain G from PDB  Type:PROTEIN  Length:95
                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..eeeeeehhhhh....hhhhhhhh.........eee.....hhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                 5a15 G  23 FPEVVELNVGGQVYFTRHSTLISIPHSLLWKMFSPLAKDSKGRFFIDRDGFLFRYILDYLRDRQVVLPDHFPEKGRLKREAEYFQLPDLVKLLTP 124
                                    32        42        52    ||  69        79        89        99       109       119     
                                                             57|                                                           
                                                              65                                                           


Chain H from PDB  Type:PROTEIN  Length:95
                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..eeeeeehhhhh....hhhhhhhh.........eee.....hhhhhhhhhhhh.........hhhhhhhhhhhh.hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                 5a15 H  23 FPEVVELNVGGQVYFTRHSTLISIPHSLLWKMFSPLAKDSKGRFFIDRDGFLFRYILDYLRDRQVVLPDHFPEKGRLKREAEYFQLPDLVKLLTP 124
                                    32        42        52    ||  69        79        89        99       109       119     
                                                             57|                                                           
                                                              65                                                           


Chain I from PDB  Type:PROTEIN  Length:95
                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..eeeeeehhhhh....hhhhhhhh.........eee..hhhhhhhhhhhhhhh.........hhhhhhhhhhhh.hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                 5a15 I  23 FPEVVELNVGGQVYFTRHSTLISIPHSLLWKMFSPLAKDSKGRFFIDRDGFLFRYILDYLRDRQVVLPDHFPEKGRLKREAEYFQLPDLVKLLTP 124
                                    32        42        52    ||  69        79        89        99       109       119     
                                                             57|                                                           
                                                              65                                                           


Chain J from PDB  Type:PROTEIN  Length:95
                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..eeeeeehhhhh....hhhhhhhh.........eee..hhhhhhhhhhhhhhh.........hhhhhhhhhhhh.hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                 5a15 J  23 FPEVVELNVGGQVYFTRHSTLISIPHSLLWKMFSPLAKDSKGRFFIDRDGFLFRYILDYLRDRQVVLPDHFPEKGRLKREAEYFQLPDLVKLLTP 124
                                    32        42        52    ||  69        79        89        99       109       119     
                                                             57|                                                           
                                                              65                                                           


Chain K from PDB  Type:PROTEIN  Length:95
                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..eeeeeehhhhh....hhhhhhhh.........eee.....hhhhhhhhhhhh.........hhhhhhhhhhhh.hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                 5a15 K  23 FPEVVELNVGGQVYFTRHSTLISIPHSLLWKMFSPLAKDSKGRFFIDRDGFLFRYILDYLRDRQVVLPDHFPEKGRLKREAEYFQLPDLVKLLTP 124
                                    32        42        52    ||  69        79        89        99       109       119     
                                                             57|                                                           
                                                              65                                                           


Chain L from PDB  Type:PROTEIN  Length:95
                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..eeeeeehhhhh....hhhhhhhh.........eee.....hhhhhhhhhhhh.........hhhhhhhhhhhh.hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                 5a15 L  23 FPEVVELNVGGQVYFTRHSTLISIPHSLLWKMFSPLAKDSKGRFFIDRDGFLFRYILDYLRDRQVVLPDHFPEKGRLKREAEYFQLPDLVKLLTP 124
                                    32        42        52    ||  69        79        89        99       109       119     
                                                             57|                                                           
                                                              65                                                           


Chain M from PDB  Type:PROTEIN  Length:95
                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..eeeeeehhhhh....hhhhhhhh.........eee.....hhhhhhhhhhhh.........hhhhhhhhhhhh.hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                 5a15 M  23 FPEVVELNVGGQVYFTRHSTLISIPHSLLWKMFSPLAKDSKGRFFIDRDGFLFRYILDYLRDRQVVLPDHFPEKGRLKREAEYFQLPDLVKLLTP 124
                                    32        42        52    ||  69        79        89        99       109       119     
                                                             57|                                                           
                                                              65                                                           


Chain N from PDB  Type:PROTEIN  Length:95
                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..eeeeeehhhhh....hhhhhhhh.........eee.....hhhhhhhhhhhh.........hhhhhhhhhhhh.hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                 5a15 N  23 FPEVVELNVGGQVYFTRHSTLISIPHSLLWKMFSPLAKDSKGRFFIDRDGFLFRYILDYLRDRQVVLPDHFPEKGRLKREAEYFQLPDLVKLLTP 124
                                    32        42        52    ||  69        79        89        99       109       119     
                                                             57|                                                           
                                                              65                                                           


Chain O from PDB  Type:PROTEIN  Length:95
                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..eeeeeehhhhh....hhhhhhhh.........eee..hhhhhhhhhhhhhhh.........hhhhhhhhhhhh.hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                 5a15 O  23 FPEVVELNVGGQVYFTRHSTLISIPHSLLWKMFSPLAKDSKGRFFIDRDGFLFRYILDYLRDRQVVLPDHFPEKGRLKREAEYFQLPDLVKLLTP 124
                                    32        42        52    ||  69        79        89        99       109       119     
                                                             57|                                                           
                                                              65
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5A15)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5A15)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5A15)

(-) Gene Ontology  (9, 9)

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  5a15
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(-) Related Entries Specified in the PDB File

4ues CRYSTAL STRUCTURE OF THE N-TERMINAL BTB DOMAIN OF HUMAN KCTD10
4uij CRYSTAL STRUCTURE OF THE BTB DOMAIN OF KCTD13
5a6r CRYSTAL STRUCTURE OF THE BTB DOMAIN OF HUMAN KCTD17